Comamonas terrigena: CT3_19620
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Entry
CT3_19620 CDS
T09012
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ctez
Comamonas terrigena
Pathway
ctez03030
DNA replication
ctez03410
Base excision repair
ctez03420
Nucleotide excision repair
ctez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CT3_19620 (ligA)
03410 Base excision repair
CT3_19620 (ligA)
03420 Nucleotide excision repair
CT3_19620 (ligA)
03430 Mismatch repair
CT3_19620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctez03032
]
CT3_19620 (ligA)
03400 DNA repair and recombination proteins [BR:
ctez03400
]
CT3_19620 (ligA)
Enzymes [BR:
ctez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CT3_19620 (ligA)
DNA replication proteins [BR:
ctez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CT3_19620 (ligA)
DNA repair and recombination proteins [BR:
ctez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CT3_19620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CT3_19620 (ligA)
MMR (mismatch excision repair)
DNA ligase
CT3_19620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CT3_19620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BBL24507
LinkDB
All DBs
Position
2199666..2201789
Genome browser
AA seq
707 aa
AA seq
DB search
MTENFDLFSGETPSASATPAPNAVVAKVQALRAQLQQWAHEYYVQDAPTVPDGEYDRVFQ
QLQGLEGAYPQLITPDSPTQRVIGAVLDGLTPVRHVVPMLSIRTETDTEATGAEAFDARI
RRELELDDSAPAVEYVCEPKFDGLAMSLRYEQGRLVHAVTRGDGEVGEEVTHNIRTIRQI
PLTLPTGVGGVPPVLEVRGEVYMRRADLEKLNARQEAAGAKLFANPRNAAAGAVRQLDSN
IAAQRPLSFFAYGMGDVTPVAEGGPQFGTHYALLQQLKAWGFPVAPQVQIAHGAAELVAF
HARMGAERATLPYEIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAEEMPTVMEGIDV
QVGRTGKLTPVARLAPVAVGGVVVTNATLHNLFETRKKGVRVGDTVIVRRAGDVIPEVVG
RVPGTRAAYVPNFRMPAACPICGSAVVREKGEANHRCTGGLFCAAQRKEALLHFAARRAM
DIEGLGDKLVDQLVDGNVVRTLPDLYKLGLTSLVALDRMAEKSAQNVLDALEKSKSTTLP
RFLFGLGIRNVGEATAKDLARHFGLLDAIMDASVEQLLEVRDVGPIVADSIHTFFAQPHN
REVVEQLRACGVHWEEGAPAEKPAQILAGMTVVLTGTLPTLTRDAAKDMLEAAGAKVAGS
VSKKTSYVVAGADAGSKLAKAEELGVKVLDEAGMLALLQGGNVDGGA
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaattttgaccttttttcgggtgaaacgcccagtgcaagcgctacgccggct
cccaatgcggtggtggccaaggtgcaggcgctgcgtgcccagttgcagcagtgggcgcat
gaatactatgtgcaggatgcacccaccgtgcccgatggcgagtacgaccgcgtgttccag
cagctgcagggcctggaaggggcgtatccgcagctcatcaccccggattcccccacgcag
cgcgtgatcggtgccgtgctcgacggcttgacgccggtgcgccacgtggtgcccatgctg
tccatccgcaccgagaccgataccgaagccacaggcgccgaagcctttgatgcccgcatt
cgccgcgaactggagctggacgacagcgcgccggcggtggaatatgtgtgcgagcccaag
ttcgacggcctggccatgagcctgcgctacgagcagggccgcctggtccatgccgtcacg
cgcggggacggcgaggtgggcgaggaggtgacgcacaacatccgcaccatccgccagatt
ccgttgaccttgccgacaggtgtgggcggcgtaccgccggtactggaagtgcgcggcgag
gtgtatatgcgccgcgccgacctggaaaagctcaatgcccgccaggaggccgcaggtgcc
aagctgtttgccaacccgcgcaacgccgcggccggtgccgtgcgccagcttgacagcaat
atcgccgcccagcgcccgctgtccttttttgcctacggcatgggggatgtcacgccggtg
gcggaaggggggccacagtttggcacccattacgccctgctgcagcagctcaaggcctgg
ggattcccggtggcgccgcaggtgcagatcgcccatggtgctgccgaactggtggcgttt
catgcccgcatgggggccgagcgcgccacgctgccgtacgagatcgatggtgtggtctac
aaggtcaacagtctggccctgcagcgccagttgggctttgtcacgcgcgagccgcgctgg
gccgtggcccacaaatacccggcggaagagatgcccaccgtgatggaaggcatcgatgtg
caggtggggcgtaccggcaagctcacccctgtggcgcgtctggcgccggtggcggtcggt
ggggtggtggtgaccaatgccaccttgcacaacctgttcgagacgcgcaagaaaggcgtg
cgcgtgggggacacggtgatcgtgcgccgcgcgggggacgtgattcccgaggtcgtcggc
agggtgcccggtacgcgggccgcctatgtgcccaatttccgcatgcccgctgcgtgccct
atctgcggcagtgccgtggtgcgcgaaaaaggcgaggccaaccaccgctgcaccggcggg
ctgttctgtgctgcccagcgcaaggaagcgctgctgcattttgccgcccgccgtgccatg
gacattgaaggtctgggcgacaagctggtggaccagctggtggatggcaatgtggtgcgc
acgctgcccgatctgtacaagctgggtttgacatcgctggtggcactggaccgcatggcc
gaaaagtcggcgcagaacgtgctagatgcgctggagaagtccaagtccaccacgctgccg
cgttttctgttcgggctgggcatccgcaatgtgggggaggccacggccaaggatctggcg
cggcacttcggcctgctggacgccatcatggacgccagcgtggaacaactgctggaagtg
cgtgacgtgggtcccatcgtggcggacagcatccacaccttttttgcgcagccccacaac
cgtgaggtggtggagcagctgcgtgcctgcggggtgcactgggaagagggcgcaccggcc
gaaaagccggcccagatcctggctggcatgacggtggtgctgactggcaccctgcccacg
ctgacgcgcgatgctgccaaggacatgctggaagccgctggcgccaaggtggccggctcg
gtcagcaagaagaccagctatgtggtggccggggcagacgccggcagcaagctggccaag
gccgaggaactgggtgtgaaggtgctggacgaggcgggcatgctggccttgctgcaaggc
ggcaacgtggacggaggcgcctga
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