Chlamydia trachomatis D-LC: CTDLC_0146
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Entry
CTDLC_0146 CDS
T01901
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ctf
Chlamydia trachomatis D-LC
Pathway
ctf03030
DNA replication
ctf03410
Base excision repair
ctf03420
Nucleotide excision repair
ctf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTDLC_0146 (ligA)
03410 Base excision repair
CTDLC_0146 (ligA)
03420 Nucleotide excision repair
CTDLC_0146 (ligA)
03430 Mismatch repair
CTDLC_0146 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctf03032
]
CTDLC_0146 (ligA)
03400 DNA repair and recombination proteins [BR:
ctf03400
]
CTDLC_0146 (ligA)
Enzymes [BR:
ctf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CTDLC_0146 (ligA)
DNA replication proteins [BR:
ctf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CTDLC_0146 (ligA)
DNA repair and recombination proteins [BR:
ctf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CTDLC_0146 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTDLC_0146 (ligA)
MMR (mismatch excision repair)
DNA ligase
CTDLC_0146 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CTDLC_0146 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
HHH_3
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Transposase_20
RlmA_N
Motif
Other DBs
NCBI-ProteinID:
ADI51834
LinkDB
All DBs
Position
163591..165582
Genome browser
AA seq
663 aa
AA seq
DB search
MGAVSRDDYIALCTELVEHDRRYYVLNQPTISDYSYDVKMRELQEIEVQHPEWKVSWSPT
MYLGDRPSGQFPVVPHSSPMLSIANVYSLQELEEFFSRTEKLLGYSPGYSLELKIDGIAV
AIRYEKRLFAQALSRGNGVKGEDITANVSTIRSLPMRLPQEAPEDLEVRGEVFLSYEAFE
ELNACQREQGKLEFANPRNAAGGTLKLLSSKEAAKRKLDLSVYGLITDQKKRSHFENLQL
CSQWGFFVAGMPKQCRSRQDVVERIREIEEMRAALPMAIDGVVIKVDNIAYQDRLGLTSK
HYRWAIAYKYAPERAETILEDIVVQVGKTGILTPVAELAPVFLSGSRVSRASLYNQDEIE
KKDIRIGDSVYVEKGGEVIPKIVGINLAKRSLESEPWKMPSLCPVCHEPVVKEKVSVRCV
NPLCSGGMLEKICFFASKSALNIDHLGEKVVTKLFEVGLISSCSDIFALAEEDLKQVPGF
KDRSIQNLLASIAGAKKVALDRLLTALSIPFVGSSGAIALADHFGTLDKVIEASLDELMS
IEGIGPKVAASIVAFFSKHENREEIRRMQELGVQVLSKQSDKEAPLQGKVFVLTGTLQQM
TRTQAEERIRCLGGKVSSSVSKSTYAVIAGSEAGGKLKKAQDLGLSIWNESELLRILDAK
SVS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgggtgctgtatctcgagatgattatattgctttatgcacagaattagtggaacatgac
cgacgctattatgtgctcaatcaaccgacgatttctgattacagctatgatgtgaaaatg
cgagagcttcaagaaatagaagttcagcatccggaatggaaggtttcatggtctcctacc
atgtatttgggggatcgtccttcaggacagtttcctgtggttcctcattctagccccatg
ttgtctatagcgaatgtatactcattgcaagagctagaggaatttttttcccgtacagaa
aaattattggggtactctcctggatattctttagaactcaaaattgatggaattgctgtc
gccattcggtacgagaagcgattgtttgctcaagctttgagtcgggggaatggggtaaaa
ggagaagatattacagctaatgtcagtactatacgctctttacctatgagactccctcaa
gaggctcccgaggatctagaagtgcgaggagaagtgtttctttcatatgaagcgtttgaa
gagctcaatgcttgtcaacgggaacaagggaaactggaatttgctaatcctcgtaatgca
gctggaggaactcttaagcttttatcttctaaggaagctgctaagcgtaaattagacttg
tctgtttatgggttgatcacagatcaaaaaaaacgctcacattttgaaaatcttcagtta
tgctctcaatggggatttttcgttgcagggatgccgaaacaatgccgttcgagacaagat
gtggtagaacgtattcgagagatagaggagatgcgcgcagcgctcccgatggctatcgat
ggagtcgtcattaaagtagacaatattgcataccaggatcggctaggtttgacgagcaaa
cattatcgttgggcgatagcttataaatatgctccggaaagagcagaaacgattttggag
gatattgtcgttcaagtagggaaaacgggtattcttactccggttgccgagttagctcct
gtttttttatctgggagccgcgtgtccagagcatccttatacaaccaagatgagattgaa
aaaaaagatattcgcatcggagattcggtgtatgtcgaaaaaggaggagaggttattccc
aaaattgttgggattaatttggctaagcgttcattagagagcgagccttggaaaatgcca
agcctgtgtcctgtatgtcatgaacctgttgttaaagagaaggtgtcggtgcgttgtgtc
aatccactttgttcaggggggatgctagaaaagatctgtttctttgcaagtaagagcgct
ttaaacatagatcatttgggagagaaggtcgtaactaaattattcgaagtaggtctcatt
agttcttgttcggatatatttgctcttgcagaagaagatttgaaacaggtccctgggttt
aaagatcgttctatacagaatttattggcaagcattgccggagccaaaaaggtggcatta
gatcggcttttaacggctctttctattccttttgtggggagctctggtgccatagctttg
gcagaccacttcggaactctggacaaagtaatcgaagcttctttagatgagctgatgtct
atagaggggattggtcctaaggtagctgcatcgatcgtcgcgttcttctcgaaacatgag
aatagagaggaaattcgtcggatgcaagagctaggagttcaggttctttctaagcaatcc
gataaagaggctcctttacaaggaaaagtgtttgttcttacggggactctccaacagatg
acgagaacgcaagcagaggagcgtatccgctgcctaggggggaaagtgagctcttcggta
tcgaagagcacatatgccgtcatagcaggtagcgaagctgggggtaaattgaaaaaagct
caagatttaggtttaagtatttggaacgagagcgaattattaagaattcttgatgcaaaa
tcggtctcctga
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