Thermochaetoides thermophila: CTHT_0026720
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Entry
CTHT_0026720 CDS
T03100
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CTHT_0026720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthr03400
]
CTHT_0026720
Enzymes [BR:
cthr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CTHT_0026720
DNA repair and recombination proteins [BR:
cthr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CTHT_0026720
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
RNA_ligase
DNA_ligase_A_C
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
18256710
NCBI-ProteinID:
XP_006693130
UniProt:
G0S6M3
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MSATKKRTKSPDPEAVEEDEKQYGNGPLTLEELDQQPRNHSKTFLFSELYKSLFNPLIEC
KPHPPGAATTATTAAAKGRPGRRGANPSKVSYHEQRRHIIERFMARWRADVGDDFYPAMR
LILPDKDRDRGVYGLKESAIGRLLVKVMKIDRHSEDGYALMHWKLPGGAGGWKFGGGGGG
GGGGGGNGKGAGTAGDFAARCYEIVGKRAMRTEPGNLTIADVNVMLDRLARANGEAEQLP
IFEEFYRRMNAEELMWLVRIILKDMKVGATERTFFNLWHPDAEALFSVSSSLRRVCWELY
DPEFRLEQEETGVTLMSCFQPQLAQFQMQGSFAKLVANLGVTEEEPEFWIEEKLDGERMQ
MHMMEDESVPGGFRFAFWSRKAKDYTYLYGNSLEDDKSALTRHLKNAFHPGVRNLILDGE
MITWDPEVDKIMPFGTLKTAALEQQKNPFASGPRPLYRVFDILLLNDKSLTDYTLADRRR
ALERAVKGVPRRLEIHPYEKATSADAIEPALRKIISESSEGLVLKNPRSRYRLNSRNNDW
IKVKPEYMSEHGESLDCVIIGGYYGSGRRGGTLSSFLCGVRVSENFTRSGAASKTEKCLS
FCKVGGGFKGEDYAEIRHHTEGKWKDWDPSNPPSEYIELGGGERLQHERPDVWIRPSESV
VISIKAASFGPSDQFATGYTLRFPRFRALRLDKAWDQAMDVDECDAIRTKVKEEEQERKA
MEIENRKRRPTKRQKREIVVAGTDPNASAPLEFAVPLTNKQLFKGLEFCVLSEGLRPRKI
SKPELEELIKKHGGTIKQKVDPASVRGGGTIVLADKNVVRAASLKKAGGVDIVRPRWVFD
CLERTGGEGYLLPFETDRHLLHATEGMKLVARDNTDAYGDSYARDVGIDELREILDRMNL
PERSKEFDAGLFLDQLEEHGHGLEEMRSFLFRRCRVYFAVAEGKEGSETEVIRLGYYIRF
GNGEIVESIKDRKDITHMVVVAGSKEQERIVAVDMRYKVSSWRAIPRIVTPKWVEDCWKE
GTVVDEEAYAPC
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccacaaagaagaggacgaagtctcctgatccggaggcagtagaagaggatgaa
aaacagtatggcaatggcccgttgacactggaagagttagatcaacagccacgaaatcac
tccaaaacattcctcttctccgaactctacaagtccctcttcaaccctctcattgaatgt
aaaccccatccccctggagccgcgaccacagccacgacggcagcagccaagggccgtccc
ggccggcgcggcgcgaacccatctaaggtttcgtatcacgaacagcggcggcacatcatt
gagcgcttcatggcgcgatggcgcgcagacgtgggcgacgacttctacccggccatgcgc
ctcatcctgccggataaggatcgcgatcgcggtgtgtatggcctgaaagagagcgccatt
gggcgactgctcgtcaaggtcatgaaaattgatcgccattccgaggatggctacgcactg
atgcattggaagctgcctggcggtgctgggggttggaagtttggtggcgggggagggggc
ggaggagggggaggtggtaacggcaagggggctggtacggccggcgatttcgccgcgcgg
tgttatgaaatcgttgggaagagagccatgcgcacggagccagggaatctcactatcgca
gatgtgaacgtgatgttggatcggttggcgcgtgcgaatggcgaggcagagcagctgcct
atcttcgaagagttctaccggagaatgaacgcagaggagctgatgtggcttgtgcgcatc
attctcaaagacatgaaggtgggcgctacagagcgaacatttttcaacctgtggcacccg
gatgctgaagcgctgttcagcgtgtcatcaagcttacgacgggtctgttgggagctctat
gacccagaatttaggttagagcaagaagaaacaggcgtaacgctcatgtcctgtttccag
ccgcagctggcgcaattccagatgcaaggctcgtttgccaaattagtggcgaacttgggg
gtcactgaggaggaaccagagttctggattgaggagaaactagatggcgagcgaatgcag
atgcacatgatggaggatgagagcgtgccaggaggattccgatttgccttttggtcccgt
aaagcaaaggattacacatatctgtacgggaacagtttggaagacgacaaatcggcactt
acacgccacttgaagaacgcgtttcacccgggcgtccgcaacctgatcctggacggtgag
atgatcacctgggatcccgaagtggacaagatcatgccttttggcacactcaagacggcc
gctctggagcagcaaaagaatccctttgcttctggtccacggcccctgtaccgggtgttc
gacattctgttgctcaatgacaagtcgttaacagactacactctggctgaccgccgtcga
gctctggagcgagctgtcaaaggagttccaaggcggttagagatccatccttacgaaaag
gccacctcggcagatgctatcgagccggctctgcgcaagatcatttccgaatcatcggag
ggtctagtcctcaagaaccctcgatcgcggtaccgcctcaacagccgcaacaacgactgg
atcaaagtcaagcccgagtatatgtctgagcacggcgagtctctcgactgcgtcattatc
ggtggttactatgggtctggacggcgaggtggtaccttgtcaagctttctttgcggtgta
cgggttagtgagaactttaccaggtcaggtgcagcctccaaaacggaaaagtgtctcagc
ttctgcaaggtcggtggcggcttcaagggcgaagactatgctgagatccggcatcacacg
gagggcaagtggaaggactgggacccctcaaatccgccatccgagtacatcgaacttggc
ggcggcgagcggctgcagcacgaacgaccagatgtctggatccggccgagcgagtccgtg
gttatctcgattaaagcagcttcgtttgggccctcagaccagtttgcaacaggttacacg
ctgcgatttccgcgtttccgtgccctgcgcctggacaaggcctgggaccaggctatggat
gtcgatgaatgtgacgccatccgcaccaaggttaaagaagaagagcaagaacgcaaggct
atggaaatagaaaatcgaaagcgtcggccgacgaaacgccagaaacgcgagatcgttgtg
gctggcactgaccccaacgcctctgcaccccttgaatttgctgtacccttaaccaacaag
cagctgttcaagggcctcgaattttgcgtgctctctgagggtctcaggccacggaagatt
tcgaagccggagctagaggagcttatcaagaaacatggagggacaatcaagcagaaagtc
gacccagcatcagtccgcgggggcggcacgatcgtcttggccgacaagaacgttgtgcgc
gcagccagccttaagaaagccgggggtgtggatatagttcgcccccgttgggtattcgac
tgcctcgagcgtactggcggcgaagggtacctgctgccctttgaaacagaccgtcacttg
ttgcatgccactgaaggcatgaagcttgtggctcgtgataatacggatgcatatggcgat
agttatgcgcgggatgtgggaattgatgagttacgggagatattggatcgcatgaatctt
ccggagcgttcgaaggaattcgatgctgggctgtttctagaccagttggaggaacatgga
catgggctggaagagatgaggagcttcctgttcaggaggtgtcgtgtctattttgctgtt
gcagaaggaaaagaaggatctgagaccgaggtgataaggttgggttactacatccggttt
ggaaacggggagatcgttgagagcatcaaagacagaaaagacataacgcatatggttgtt
gttgccggaagcaaagaacaagaacgcatcgtggcagtagatatgaggtacaaagtcagt
tcgtggagagctatcccacggattgttacacccaagtgggttgaggattgctggaaggag
ggcaccgtggtagatgaagaggcttacgctccttgttaa
DBGET
integrated database retrieval system
