Thermochaetoides thermophila: CTHT_0054900
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Entry
CTHT_0054900 CDS
T03100
Name
(RefSeq) 116 kda u5 small nuclear ribonucleoprotein component-like protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTHT_0054900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cthr03041
]
CTHT_0054900
Spliceosome [BR:
cthr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CTHT_0054900
Complex C
U5 SnRNP specific factors
CTHT_0054900
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
EFL1
DUF6716
Motif
Other DBs
NCBI-GeneID:
18259528
NCBI-ProteinID:
XP_006695823
UniProt:
G0SBV2
Structure
PDB
PDBj
LinkDB
All DBs
Position
Unknown
AA seq
986 aa
AA seq
DB search
MWQRATRLRLSESFGPSTTDSNHTFPDLAATMDDDLYDEFGNFIGEEAESEEESDHGANA
GVYAYDEYVDEAPEEPAEEQMDIDEEPPSNAVILHEDKQYYPTAAQVFGEGVETLVQEED
AQPLTQPIIAPVEQKKFSIQEADLPPVYFDRGFMTDLMNFPEQIRNIALAGHLHHGKTAF
MDMLVLETHAIQERLDKRTGKKRDEQLRYTDVHVIERDRGLSIKAAPMSLVLSSTKGKSH
LFNIIDTPGHVDFVDEVAAAFRLVDGVCLVVDVVEGVQVNTEQIIKHAVLEDIPLTLIIN
KMDRLILELKIPPTDAYFKLKHVIEEVNTVIENTIPGRGESKRLSPEKGNVLFACTSMGW
CFTLQSFAKMYSESYGGVNVEEFARRLWGDVYFNPKKRTFTRKPIEEGAKRSFVNFVMEP
IYKLYSHTISEGPEDLKRTLSKLGIFLKPSQYKADPKVLMKLVCEQFFGPSTAFVDMVIK
HIPSPLEAAEKKLERYYTGPLDTKIAESMKNCDQNGPLVVHVTKLFNTIDAKSFYAFGRV
MSGIARPGADVRVLGEGYTLDDEEDMVVSRISDVFIAETRYNIPTDGVPAGNFVLLGGVD
NSIVKTATIVDKKFDNGEDAYVFKPLSHFTESVLKVAVEPINPSELPKMLDGIRKINKSY
PLITTKVEESGEHIILGTGELYMDCVLHDLRKLYADMEVRVSDPVVRFCETVQDMSATKC
YAITPNKKNTITMAAEPLDDGIAQDIESGAVKIKDPPRKVAKFFEEKYGWDKLAARSIWA
FGPDEMGPNILQDDTLPTEVDKKRLATVKESIRQGFAWATREGPLCEEPIRNTKFRLIDV
SLAQEAIFRVSMTGPQSSVSMVYNILSRRRGHVLSDGPIAGTPLYRVNGLIPVIDSFGFE
TDLRINTPGQAMVSLVFDRWSIVPGDPLDREQVTRPLQMATAQATARDFVLKTRRRKGLS
EDVTVAKFLEPEFYQSLLESGTLGEP
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaacgcgcgacgcgcctgcggctcagtgaaagtttcgggccatcaaccaccgac
tccaatcacacgtttcctgacctcgccgcaactatggatgacgatctgtatgacgaattt
ggcaacttcatcggagaggaggccgagtcggaagaggagtccgatcatggagccaatgcg
ggcgtctacgcctacgacgaatatgttgacgaggcgcctgaggagcccgctgaggagcag
atggacattgatgaggagcctccttccaatgccgttatcctccatgaagacaagcaatac
tacccgacagccgcccaggtgttcggcgagggtgtcgaaacgttggtccaggaggaggat
gcgcagccattgacgcaacccatcattgcgcccgtggagcaaaagaagttcagtatccaa
gaagccgatctaccacctgtatatttcgaccgcggcttcatgaccgatctgatgaacttc
cccgagcagatccgcaatattgcgctggctggccacctgcaccacggcaaaaccgccttc
atggacatgcttgtgttggagacgcacgctattcaagaacgcttggacaagcggacagga
aagaagcgtgatgagcagctgcggtacaccgacgtccatgtgatagagcgcgaccggggc
ctgtcgatcaaggccgctcctatgagtttagttctgtccagcacaaagggaaaatcgcat
ctattcaacattatcgatacccctggacatgtggattttgtcgatgaagtcgctgcagct
ttccgtcttgtagacggtgtctgccttgttgttgatgtagtggaaggtgtccaggtcaac
acagagcagattatcaagcacgccgttctcgaggatattcctctcaccctgattatcaac
aaaatggatcgattgattcttgagcttaagattcctcctacggatgcttacttcaaactc
aaacatgtcatagaagaagtcaacactgtcattgagaacacgattcctggtcggggagag
agcaaaaggttaagcccggagaagggcaacgtgcttttcgcgtgcacttctatgggatgg
tgcttcactctccaatcatttgctaagatgtattcggaaagttatggcggcgtcaatgtg
gaagaatttgcgcgcaggctctggggcgatgtctacttcaaccccaagaagcgtaccttc
acaaggaaaccgattgaagagggagcgaagagatcatttgttaatttcgtcatggagccc
atctacaagctctactcccacaccatcagcgaaggcccagaagatttgaagaggaccctg
agcaagctgggaattttcttgaagccatcccagtacaaggctgaccccaaggttctcatg
aagttggtttgcgagcaattctttgggccatcaacggcctttgtggatatggttatcaag
catattccctcacctctcgaagctgcggaaaagaagctcgagagatattacactgggcct
cttgacaccaagattgcggagtctatgaaaaattgcgaccagaacgggcccctagtggtc
catgtgaccaagctcttcaacaccattgacgcaaagagcttttacgccttcggccgagtg
atgagtggcattgcccggccgggcgcagatgtccgggtgcttggagagggctatactctt
gacgatgaggaagacatggtggtcagcagaatctccgatgtcttcatcgctgagacaagg
tacaacattccaactgacggcgtgccagccggcaattttgttcttcttgggggtgttgac
aactccattgtcaagaccgcaactattgtcgacaagaagttcgacaacggcgaggatgcc
tatgtgttcaagccactgtcgcactttactgaatccgtcctcaaggtagctgttgagccc
attaaccctagcgagctgccgaagatgctcgatggtatcaggaaaatcaacaagagctat
cctttgattaccacaaaagtggaagagtcaggagagcatatcatcctgggcactggtgag
ctatacatggactgtgtcttgcacgacctgcgcaagctctacgccgacatggaagtccgg
gtctcagaccctgttgtccggttctgtgagacggtgcaggacatgtcggccaccaagtgc
tatgctattacacccaataagaaaaacactattaccatggcagcagagcccttggatgat
ggtattgcccaggacatcgagtctggggctgtcaagatcaaggatcctccgcggaaggta
gccaagttctttgaggaaaagtatgggtgggataagctcgctgccaggagcatttgggca
tttgggccggatgagatgggcccaaacatcctgcaggatgatacactacctacagaagtc
gacaagaagcggttagcaacagttaaggaatctatccgccagggcttcgcctgggcaacc
agagagggcccgttgtgcgaagaacctatccgcaacactaagttccgcctcatcgatgtc
tcccttgcccaggaagccattttccgtgtctccatgactggcccccagtcgtcggtcagc
atggtctacaacattctttctcgccgtcgcggccacgtgctgtctgatggccccattgcg
ggcacgccgttgtatcgggtcaacggtcttattcccgtcattgactcgtttggctttgag
actgatctgcgcatcaacacacccggccaggccatggtcagcctggtgtttgaccgctgg
agcatcgtccctggtgatcctctagaccgagagcaggtcactcggccgctacagatggct
acagctcaggcgacggcgagagacttcgtgctgaaaactagaaggagaaagggtctgagt
gaggatgtgaccgtggcaaagtttcttgagccggagttctatcagagcttgttggagagc
gggacgttgggtgaaccttaa
DBGET
integrated database retrieval system
