KEGG   Thermochaetoides thermophila: CTHT_0072980
Entry
CTHT_0072980      CDS       T03100                                 
Name
(RefSeq) putative RNA splicing factor
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
cthr  Thermochaetoides thermophila
Pathway
cthr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cthr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CTHT_0072980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cthr03019]
    CTHT_0072980
   03041 Spliceosome [BR:cthr03041]
    CTHT_0072980
   03032 DNA replication proteins [BR:cthr03032]
    CTHT_0072980
Messenger RNA biogenesis [BR:cthr03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     CTHT_0072980
Spliceosome [BR:cthr03041]
 Complex A
  U1 snRNP components
   Sm proteins
    CTHT_0072980
  U2 snRNP components
    CTHT_0072980
 Complex B
  U1 snRNP components
    CTHT_0072980
  U4/U6.U5 tri-snRNP components
    CTHT_0072980
 Complex C
  U2 snRNP components
    CTHT_0072980
DNA replication proteins [BR:cthr03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     CTHT_0072980
SSDB
Motif
Pfam: LSM Flag1_repress
Other DBs
NCBI-GeneID: 18261336
NCBI-ProteinID: XP_006697555
UniProt: G0SHQ3
Structure
LinkDB
Position
Unknown
AA seq 211 aa
MSSSQNRQGKMAGYINWRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKTKRMQAKP
NSSTTQTLIQEEKRTLGLTIVRGANIIALSVESPPPADPSARLGKTTGAGIASTLTAGPG
VARPAGRGAAAPISLAGPAPGVGGAVPPPPFPGFPAAAPPGFPGRGGPAPPGFPAAPFPP
PAGFPGAPGFPPGFPPGGAPPPAGFNPPPRR
NT seq 636 nt   +upstreamnt  +downstreamnt
atgtcgtcgtcccagaacaggcagggcaagatggccggttacatcaattggcgcatgcgc
gtcactctgaatgacgggcgccagatgaccggccagatgctcgcctttgacaagcacatg
aacctcgtcctcgcagataccgaagagttccgcaagaccaaacgcatgcaagccaagcct
aactcgtcgactactcagaccctcatccaggaagagaagcgtactcttggtttgacgatc
gttcgcggcgcaaacatcatcgcgctttctgtcgagtctccccctcctgccgacccgagt
gcccgtctcggcaaaaccacaggtgccgggatcgcctcgaccctgaccgctggtcctggc
gttgcgcgccctgctggtcgtggtgcggccgcccctatctcgttggctggtccggccccc
ggtgttggtggtgcagttcctccccctccgttcccaggctttcctgctgctgctccgcct
ggcttccctggccggggtggccctgccccgcccggttttccggccgctcctttccctccg
ccggctggctttcccggcgcgcctgggttcccacctggtttccctcctggtggtgcgccg
ccgccggccggcttcaaccctccgccccggcgctaa

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