Crotalus tigris (Tiger rattlesnake): 120310315
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Entry
120310315 CDS
T08476
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04622
RIG-I-like receptor signaling pathway
ctig04623
Cytosolic DNA-sensing pathway
ctig05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120310315
04623 Cytosolic DNA-sensing pathway
120310315
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120310315
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ctig04054
]
120310315
Enzymes [BR:
ctig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120310315
Pattern recognition receptors [BR:
ctig04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
120310315
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
Helicase_C
CapR
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
120310315
NCBI-ProteinID:
XP_039204550
LinkDB
All DBs
Position
Unknown
AA seq
581 aa
AA seq
DB search
MFVRKFIKRPQKENYQVFKKWRRFNIRGFWIPTIYNVRKKFFLIQKHMKTNAGLLNILII
QIVGLTASPGIGNAKNVGEAIDYICNICASLNIEVISTVRKNIKDLEEIVPKPEKIIKLV
GTRPQNRFVDIVSQMMSKAEDLARQFHPIDNMSVMKNQCYGTQKYEQWIVDVQKKAVVLQ
LPNKEEESRVCRALFICTQHLRKYNDALIINEDARTKDALIYLKDYFEDTKNGNFDNIEQ
HLASNFEVNLPELTAASEDESNENPKLEDITEILGEVYHVNPETRTILFVKTRALLAALK
NWIEETPELKHLKPQALMGRGKRNHCTGMTLPNQKGTLDAFQTNGDSKLLIATSVADEGI
DIAECNLILLYEYIGNVIKMIQVRGRGRAKDSKCILVTSKKEQEEKERYNLEKEQMMNRA
IEEVQSWDEKIFAQKINVFQKQLIKMLDSKKKPTESKPWKNNRVLLCGKCKNQACSTEDL
RVIEDSHHTVLGEKFKTRYITEPHKKARNYGNFEKKFKMYCTNCHHDWGIVVKYKTFNNM
PIIKIESFSVHDVVSNKQIHFGKWKDVDFAMKDFDIEEMSE
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtcagaaaattcatcaaaaggccacagaaagagaattaccaggttttcaaaaaa
tggaggagatttaatatacgtggattttggattccaaccatatacaatgtcagaaaaaag
ttctttttgatccagaaacacatgaaaacaaatgcaggcttattgaatattttaattatt
cagattgtaggattgaccgcttcacctggcattggcaatgccaaaaatgtaggggaggcc
atagactacatctgcaacatttgtgcttccctcaatatcgaagtgatctcaacggtcaga
aagaacataaaggacctggaagaaattgttcctaaacctgaaaaaattattaagcttgtt
gggactcgtccacagaatcgctttgtagatattgtgtctcagatgatgtcaaaagcagag
gatctagcaagacaatttcatcctattgataacatgtctgtgatgaagaatcaatgttac
gggacccagaagtatgagcagtggatagtcgatgtgcagaaaaaagctgtggtgttacag
ttgccaaataaggaagaagaaagccgagtctgcagggctctttttatttgcacacagcac
ctccggaaatacaatgatgccttaatcatcaatgaagacgcccgaaccaaagatgctttg
atttatctgaaggattattttgaggataccaaaaatggcaacttcgataatattgaacag
catctggcttcaaatttcgaagttaatttgccagaactcacagctgcttccgaggatgaa
tccaatgaaaaccctaaattggaagatattacagagattctgggagaggtatatcatgtc
aaccctgagacacgtaccattctcttcgtgaagacaagagcactgctggcagcattgaag
aattggatagaagaaacacctgaacttaagcatctgaagccacaggcactgatgggacgt
gggaaaagaaaccattgcacaggcatgaccctcccaaatcaaaaggggactttggatgcc
ttccaaaccaatggggacagcaagcttctaatagcaacgtcagttgctgacgaagggatc
gatattgctgagtgcaacctgatcctgctttatgaatatataggcaatgtcatcaaaatg
atacaagtcagaggtcgtggaagagcaaaagacagcaagtgcattcttgtgacgagcaaa
aaagaacaggaggagaaggagagatacaatttagaaaaggagcaaatgatgaacagagct
attgaagaggtacagagctgggatgaaaagatctttgcacagaagataaacgtatttcaa
aagcagctaataaaaatgctagattccaagaaaaaaccgacagaatcaaaaccctggaaa
aacaatagagttctcttgtgtggcaaatgcaagaatcaggcctgcagtacggaagatctc
cgggtgattgaggactcgcaccatactgttttgggcgagaaatttaaaacacggtatatc
acagaacctcataagaaggcacgcaactacgggaattttgagaaaaaattcaagatgtat
tgcaccaactgccatcacgactggggaatcgttgtgaagtacaagacctttaacaacatg
cccatcatcaaaattgagagcttttccgtgcacgatgttgttagcaacaagcagattcat
ttcggaaaatggaaggatgtggattttgcaatgaaagacttcgatattgaagaaatgtct
gagtga
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