Crotalus tigris (Tiger rattlesnake): 120310323
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Entry
120310323 CDS
T08476
Symbol
DDX58
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Pathway
ctig04622
RIG-I-like receptor signaling pathway
ctig04623
Cytosolic DNA-sensing pathway
ctig05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120310323 (DDX58)
04623 Cytosolic DNA-sensing pathway
120310323 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120310323 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ctig04054
]
120310323 (DDX58)
Enzymes [BR:
ctig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120310323 (DDX58)
Pattern recognition receptors [BR:
ctig04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
120310323 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
ResIII
DEAD
Helicase_C
CARD
AAA_19
CapR
AAA_25
DUF87
Motif
Other DBs
NCBI-GeneID:
120310323
NCBI-ProteinID:
XP_039204556
LinkDB
All DBs
Position
Unknown
AA seq
920 aa
AA seq
DB search
MTEVERENLLRCKEYIVKTLNPAYVLSYMKTWLSDETVEQIQEESNRPTKAAELFLQSIL
QLNVDGWFRGFLDALKASDYTGLHDAIDKWDFKIIESLEPHRQLLKRIEPAMQDIDVKEI
QVHMKECLRIQEWEEICKISERKGRQASASKLIECLCRSDKEQWPKTFQIALHDSGYNKL
TKLWDLKGADNADVEMADEDEDSCVFEIQISEEAESDNLCENSCSPSDAFQQPRYVLRKP
RSYQIELAEPALKGKHTMICAPTGSGKTFVSIMICEHHLRNRPIGQKGKVVFLATKVPVY
EQQKKVFCEYFKNDYKVAGICGENAYKSPAEIVIKQNDIIIMTPQTLLNSLTNETVLSLS
IFTLMIFDECHNTTGSNPYNMLMSKYLDLKLKQGAVLLPQIVGLTASPGIGNAKNVGEAI
DYICNICASLNIEVISTVRKNIKDLEEIVPKPEKIIKLVGTRPQNRFVDIVSQMMSKAED
LARQFHPIDNMSVMKNQCYGTQKYEQWIVDVQKKAVVLQLPNKEEESRVCRALFICTQHL
RKYNDALIINEDARTKDALIYLKDYFEDTKNGNFDNIEQHLASNFEVNLPELTAASEDES
NENPKLEDITEILGEVYHVNPETRTILFVKTRALLAALKNWIEETPELKHLKPQALMGRG
KRNHCTGMTLPNQKGTLDAFQTNGDSKLLIATSVADEGIDIAECNLILLYEYIGNVIKMI
QVRGRGRAKDSKCILVTSKKEQEEKERYNLEKEQMMNRAIEEVQSWDEKIFAQKINVFQK
QLIKMLDSKKKPTESKPWKNNRVLLCGKCKNQACSTEDLRVIEDSHHTVLGEKFKTRYIT
EPHKKARNYGNFEKKFKMYCTNCHHDWGIVVKYKTFNNMPIIKIESFSVHDVVSNKQIHF
GKWKDVDFAMKDFDIEEMSE
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggtcgaacgagagaatttgcttcgctgcaaggaatatatagtgaagacttta
aatcctgcttatgtattgagctacatgaaaacctggctgtcggatgagactgtggagcaa
attcaagaggaaagcaaccggccaaccaaggcagcagaactctttcttcagtccattcta
cagctcaacgtggatggatggttccgtggttttctggatgcactaaaagcttcagattat
accggccttcatgatgcaattgacaagtgggatttcaagataattgaaagtctggaacct
cacaggcaactgttgaaacgaattgagcccgctatgcaggacattgatgtcaaagaaatt
caggtccacatgaaagagtgcctccgaattcaggaatgggaagagatttgtaagattagt
gaaaggaaaggaagacaagcaagtgcgagcaaactgatagaatgtctgtgtagatcagac
aaagaacaatggcctaaaactttccaaatcgcactgcatgattctggatacaacaagctt
acgaagctatgggatttgaaaggagctgataacgcagatgttgaaatggcagatgaagat
gaagacagctgtgtttttgaaatacagatttctgaagaagcagaatctgacaatctttgt
gaaaattcatgttcaccttcagatgccttccagcagcccagatatgttctgaggaagcca
aggagctatcagatagaacttgctgagcctgctctcaagggcaaacacaccatgatttgt
gcccctactggatctgggaagacttttgtgtctattatgatatgtgagcatcatctccgc
aacaggccaattgggcagaaaggaaaagtggtcttcctcgctacaaaagttccagtttac
gaacaacagaagaaagtcttctgtgaatacttcaaaaatgactacaaagttgcaggcatc
tgtggggaaaatgcttacaagtctcctgcggaaatagttattaaacagaatgatatcatt
atcatgacaccccagactcttttgaactctctgactaatgagacagttctttctctttca
atattcacgctgatgatattcgatgagtgccacaacactactgggagtaatccatataat
atgttaatgtccaagtacttggaccttaaactgaagcaaggtgcagttctgctacctcag
attgtaggattgaccgcttcacctggcattggcaatgccaaaaatgtaggggaggccata
gactacatctgcaacatttgtgcttccctcaatatcgaagtgatctcaacagtcagaaag
aacataaaggacctggaagaaattgttcctaaacctgaaaaaattattaagcttgttggg
actcgtccacagaatcgctttgtagatattgtgtctcagatgatgtcaaaagcagaggat
ctagcaagacaatttcatcctattgataacatgtctgtgatgaagaatcaatgttacggg
acccagaagtatgagcagtggatagtcgatgtgcagaaaaaagctgtggtgttacagttg
ccaaataaggaagaagaaagccgagtctgcagggctctttttatttgcacacagcacctc
cggaaatacaatgatgccttaatcatcaatgaagacgcccgaaccaaagatgctttgatt
tatctgaaggattattttgaggataccaaaaatggcaacttcgataatattgaacagcat
ctggcttcaaatttcgaagttaatttgccagaactcacagctgcttccgaggatgaatcc
aatgaaaaccctaaattggaagatattacagagattctgggagaggtatatcatgtcaac
cctgagacacgtaccattctcttcgtgaagacaagagcactgctggcagcattgaagaat
tggatagaagaaacacctgaacttaagcatctgaagccacaggcactgatgggacgtggg
aaaagaaaccattgcacaggcatgaccctcccaaatcaaaaggggactttggatgccttc
caaaccaatggggacagcaagcttctaatagcaacgtcagttgctgacgaagggatcgat
attgctgagtgcaacctgatcctgctttatgaatatataggcaatgtcatcaaaatgata
caagtcagaggtcgtggaagagcaaaagacagcaagtgcattcttgtgacgagcaaaaaa
gaacaggaggagaaggagagatacaatttagaaaaggagcaaatgatgaacagagctatt
gaagaggtacagagctgggatgaaaagatctttgcacagaagataaacgtatttcaaaag
cagctaataaaaatgctagattccaagaaaaaaccgacagaatcaaaaccctggaaaaac
aatagagttctcttgtgtggcaaatgcaagaatcaggcctgcagtacggaagatctccgg
gtgattgaggactcgcaccatactgttttgggcgagaaatttaaaacacggtatatcaca
gaacctcataagaaggcacgcaactacgggaattttgagaaaaaattcaagatgtattgc
accaactgccatcacgactggggaatcgttgtgaagtacaagacctttaacaacatgccc
atcatcaaaattgagagcttttccgtgcacgatgttgttagcaacaagcagattcatttc
ggaaaatggaaggatgtggattttgcaatgaaagacttcgatattgaagaaatgtctgag
tga
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integrated database retrieval system
