Crotalus tigris (Tiger rattlesnake): 120311484
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Entry
120311484 CDS
T08476
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ctig
Crotalus tigris (Tiger rattlesnake)
Brite
KEGG Orthology (KO) [BR:
ctig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ctig03036
]
120311484 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ctig03400
]
120311484 (SMCHD1)
Chromosome and associated proteins [BR:
ctig03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120311484 (SMCHD1)
DNA repair and recombination proteins [BR:
ctig03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120311484 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_2nd
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_4th
Ig_SMCHD1_7th
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120311484
NCBI-ProteinID:
XP_039206964
LinkDB
All DBs
Position
Unknown
AA seq
2004 aa
AA seq
DB search
MVDEGATWQRRKENTDNTILNVFVYDRRRDHSNDAAELLSCHKENYGGFRKAVRQVFDIS
SKETFVITTTARKEITSENFGRIVKDNMTLYLLQRVDQLLTSATKECVEFLPHYDTLVKS
GIYEYYASEGQNPLPFALAELIDNSLSATSQNSGVRYIQLKLLFDDTQGKPAVAVIDNGR
GMTSEQLNNWAVYRLSKFRRQDNIESDHSGYVQPQIVPRSLNSDISYFGVGGKQAVFFVG
QTVRMISKPANSQDVHEFILSKEDFEKKERNKESVYSGYIRNRKLSDSSHIFDDEQFLCK
LIMEEKDKESFTAVVITEMKPENIQYLKNDFESWTRQLTHIYHYYIHGPNGNCTNLPRKE
EKVFNNMVIEISLFEKGKTPQVVNLREIEDDMQTLYINTAADSFEFKARVERDGIVEGII
RYHPFLYEKETYPEDPSRFKDADDEEGEGEEEEYYTREKGARGKKAIFECFWNGRLIPYT
TVADFEWCALPKKRGLVPVECYNRISGVLFTNDKFEVSTNKLTFTDLEIRLKDKSTIFTR
VVNGQEQRMQIDREFTNWLKNCHEKHDKQIKFTEFKEIVTRADQSSKRKSPWAKYSAIEW
DGNIYKAGHLVRSVKKTPVYHGRIQHFYLYGDHDGDVYATGGDVQIALEPQALYNEIKII
PICKLDRSVSEAEVKKYIKEEMSRFPNSLSITWPEGDELLPNETKCAGFKIGALKVEILN
KKGEAMQKLPGPSHGSKKLLVQLKLILHSPGGNQELFCYISHGAKWSYWFKKMENISKLG
TYTLNLQVVLNESNADTCAGFPLPSKTFEFHVKEGKPHKFSVGILDPPFRIGHPFNVPLD
VQDAFGHSTELTEDIVPGLEASGLTLQYEEITRRPNCVIKGIIASGLVNNYQGKNFSLKI
TLPGLKEESQVLKIKLLPGLPWQLNVKTDSDVLTLENKTALSLHVEVLDEVGNITAQSKL
HVQCTFFGVPGLPVYTADCSNTGKNELTGPALHIQNIKKVQILKARIEIPSCKNVPPVSK
IIKLLPSSYAARLQVYCTEEKKVIQIRNQEEINHVAGDVLKNLTFHMYDEGEKEIIITPA
LAEKFKISWSPKFNSKQLIKGLLPNVKVPTSVNDESCCLLTFNDEHVSLSTSFVVRPLAD
EPKLIKCKIKGSDIIKMGEKLQDEIEIMITDQHGNQIKSLTSSCMADLKISGNGLDKSYL
KTFWQQNTQTISVKGIMFEPGRPEVKELHVAWRDFSDYMKLKLIAGPPAKLVLQDWIEPE
KPISVINGKELPKAIIIQLCDQWNNPSAESNITITLSKHSNIKIIPPDMLHKTDKTGRAR
FGSLTVHAPKGEYTLQFKASYNEKALSSPVIKINVLPDSEKPECLNITYDENASFTAGNT
FPDFMVSVISEDGNNIKNINSRRICMKIREKNSDDTLSENFATFECTKANNDKDDGFFCV
RNKTVPVKVGKYIIHFVFAIDKTNVLNSKQIIIDVVPNQPVLLKPLTLPNTPAVSNVQEI
DSRTLVKNLTLIVTDKYNNRTGSDLHGKIVAKIESSTEKDIDIPLFQGKKSTVEFCFHGG
IVEIKDLVLAEKSPGRHRTKYKLVFEPVISSSKQYLQSYYLPFMFCNDYESQQQMAILTK
ERDKLSRSIKTYRDCFDIRNQLIAEIKRQIQECEKKELQLKHELKTHQIDIPEANVLQHI
ESLIIRKQAEKENILKQPRRICTVAIYPKCNQDILGKIAHLAEIEDSEVAKVISWHLASD
MDCIVTLTTAAARCIFDQTQGAQQVLPLDSIYKKDFLDWNSRPLPHERNCFNPIGNPVFA
RNLLIFPEHKESCQIVFEMLLGNTIIIDNLDAATHYRKEVVKTTHCPTLLTREGDRIRSN
GKFGGFQNKAPPIEKLRGMVFGAPLPPACKVIDLHLELLQEYRTAVFRLNKLNTDLEEQL
QSINTSEMRRKKEELADEETKLALIEQKLGMTSSQYSRSSPPSEELDLSKAPSHSKTGRE
TKRSYSSKESDSAPPMKKRIGNSN
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atggtggacgagggtgcaacatggcagcggcggaaagaaaacaccgacaacacaatctta
aatgtcttcgtgtacgaccggcgtcgggaccactcgaatgacgccgcagaactcctttca
tgtcacaaggaaaactatgggggcttccgtaaggccgtccgccaggtatttgatatttcc
tccaaagaaacttttgttatcacaacaactgctagaaaagaaataacaagtgaaaacttt
ggtcgaattgttaaagacaacatgactctctacttactacagagagttgatcagttgctc
acttcagcaacaaaggagtgcgttgagtttttgccacattatgacacacttgtgaaaagt
ggaatatatgaatactatgccagcgaaggccaaaatcctcttccatttgcacttgcagaa
ttgattgataactccttatcagctacttctcaaaattctggagttcggtacatccaatta
aaactgttatttgatgatactcaaggaaaaccagctgttgctgtgattgataatggaaga
ggcatgacttctgaacaactaaacaattgggctgtatatcgactgtcaaagtttagacga
caagacaatatagaaagtgatcattcaggatatgtacaacctcaaatagtacctcgcagc
ttaaacagtgatatatcgtattttggagttggtggtaaacaagctgtgttttttgttgga
cagactgttagaatgataagcaaacctgcaaattctcaagatgttcatgaatttatcctt
tcaaaagaagattttgaaaagaaagaaagaaacaaagaatctgtatatagtggatatata
agaaatagaaagctatctgattcttcccacatttttgatgatgaacaatttctgtgcaag
cttattatggaagagaaagacaaagaaagttttactgccgttgttattactgaaatgaag
cctgaaaatatacaatacctgaaaaatgattttgaaagttggacaagacagttaacacac
atatatcattactatatccatggaccaaacggaaactgcactaatttgccaaggaaggaa
gaaaaagttttcaataacatggtcattgagatttcactgtttgaaaaggggaagacacct
caggttgtgaatctgagagaaattgaggatgatatgcagactttatatataaatacagca
gcagatagttttgagttcaaggctcgtgttgaaagagatggtatagtggaaggaattata
cgttaccatcctttcttatatgagaaagaaacatatcctgaagatccttcaagattcaaa
gatgctgatgatgaagaaggagaaggtgaagaagaggaatattatacaagagaaaaagga
gccagagggaaaaaagctatttttgaatgtttttggaatggaagattaatcccatataca
actgtagcagattttgaatggtgtgctttgcctaaaaagagagggctcgttccagttgaa
tgctacaacagaatatctggtgtattatttacaaatgacaagtttgaagtcagcacaaac
aaactgactttcacggatttggaaataaggttaaaagataaaagtacaatttttacaaga
gttgtcaatggacaggaacagagaatgcaaattgatagagaatttacaaattggctcaag
aattgccatgaaaaacatgataaacaaatcaaatttactgagtttaaagaaatagttaca
cgtgctgatcagagctctaaaagaaagagtccttgggctaaatattcggcaattgaatgg
gatggaaatatatataaagctggacatttggtgagatcagttaaaaaaactcctgtgtat
catggaagaattcaacatttttatctgtatggagatcatgatggagatgtctatgctact
ggtggagatgttcagatagctttggagcctcaagcattgtacaatgaaataaagatcatt
ccaatatgcaaacttgatcgttcggtgtcagaagcagaagtgaaaaaatatattaaagaa
gaaatgtctcgatttcctaacagtttgtcaataacatggcctgaaggagatgaattatta
ccaaatgagactaagtgtgcaggatttaaaataggagctttaaaagttgaaatactgaat
aaaaaaggcgaggctatgcaaaaacttccaggaccaagtcatggatcaaagaaattactt
gtacaacttaagcttattttgcactctcctggtggaaatcaggaactcttttgttatatc
agtcatggagcgaaatggtcttactggttcaaaaaaatggaaaatatttctaagcttgga
acctacacgctaaatctgcaagtggtgttgaatgaaagtaatgcagacacttgtgcagga
tttcctcttccatctaaaacatttgaatttcatgtaaaagaaggcaaacctcacaagttt
tcagtaggtattttggatcctccatttcggatagggcatccattcaatgttcctctagat
gtccaggatgcctttggacattccactgaactgacggaagatattgtaccaggccttgaa
gcaagtggtctaacattacagtatgaagaaataacaagaagaccaaattgtgtcattaaa
ggcataattgcttcaggccttgtaaataattaccaaggcaagaattttagtctaaagatc
actcttcctggtctaaaggaagaatctcaagttttgaaaattaaacttctcccaggcctt
ccttggcaactaaatgtaaaaacagattctgatgtcttgacacttgagaataaaacagct
ttatctttgcatgttgaagtattggatgaagtgggcaacataacagcccaatcaaaacta
catgttcagtgcacgttttttggagttccaggccttcctgtatatactgcagattgcagc
aatactggcaaaaatgaattaactggaccagctctgcacattcaaaatataaagaaagtt
caaatacttaaagcaagaattgaaataccaagttgtaaaaatgtgcccccagtatccaaa
atcattaaactgcttcctagtagctatgctgcaagactgcaggtttattgcactgaagaa
aaaaaagttattcagattcgaaaccaggaagaaattaaccacgttgcaggtgatgtgcta
aaaaatcttactttccatatgtatgatgagggagaaaaagaaatcataataactccagct
ctagctgaaaaatttaaaataagctggagtccaaagtttaatagcaaacaactgatcaaa
ggattgctacctaatgtgaaagttccaacatctgtaaacgatgaaagctgttgtctactt
accttcaatgatgagcatgtgtctttgtcaacttcatttgtggtcagaccacttgctgat
gagccaaaacttatcaaatgcaaaattaaaggatcagatataataaaaatgggtgaaaag
ctgcaagatgaaattgagataatgattacagatcagcatggaaatcagattaagtccctg
acatcatcttgtatggctgacttgaagatttctgggaatggtctggataaatcatatttg
aaaactttttggcagcaaaatacacaaactatttctgtcaaaggaattatgtttgaacca
ggccgaccagaagttaaagaactacatgttgcttggcgtgatttttctgattacatgaag
ttaaaattgattgctggccctccagctaaattagttcttcaggactggatagaaccagag
aagcctatatctgtaattaatggcaaagaattaccaaaggctattataatccagctctgt
gatcagtggaataatccatctgctgaatctaatatcacaatcacactttcaaaacatagt
aatataaaaattattcctccagatatgctgcataaaacagataaaactggtagagcacgc
tttggaagtcttactgttcatgctcctaagggagaatacactttgcagttcaaggcctcc
tataacgagaaggcactaagcagtccagtgatcaagataaatgttttacctgactcggag
aaacctgaatgtttaaatattacatatgatgagaatgctagctttactgctggaaacact
tttcctgatttcatggttagtgttatttctgaagacggcaacaatattaaaaatataaat
tcacgaaggatttgtatgaaaatcagggaaaaaaatagtgatgatactttatcagaaaat
tttgcaacatttgaatgtaccaaagcaaacaatgacaaggatgatggctttttttgcgtc
aggaataaaacagttccagtaaaagtgggcaaatacatcatccattttgtatttgcaatt
gacaaaacaaatgttcttaacagtaaacagattataattgatgtggtgccaaaccaacca
gtactgttgaagccactaactttgccaaatactcctgctgtttctaatgttcaggagatt
gacagtcggacccttgtcaagaatttgactctcattgtaacggataaatacaacaaccgt
actggaagtgatttacatggaaaaattgtagcaaaaattgaaagttcaactgagaaagac
attgatattcccctgtttcagggtaaaaaaagtacagttgaattttgttttcacggagga
attgttgaaattaaggatcttgtgctagcagaaaaaagtccaggaagacatagaactaag
tataagcttgtatttgagccagttatatcttcttcgaaacaatatttgcaatcttattat
ttaccctttatgttttgtaatgattatgagagtcaacagcaaatggcaattcttacaaaa
gagagagacaaactttcacggtcaataaaaacatatagagattgttttgacattaggaat
cagcttattgctgaaataaaacgccaaatacaggaatgtgaaaaaaaggagttacagctc
aaacatgaattgaaaacacatcagattgacatacctgaggccaatgtgctgcaacatatt
gaatccttgataatacgtaagcaggctgagaaggaaaatatattgaaacaacctagaaga
atatgcacagttgccatatatcccaaatgtaatcaggatattttgggcaagattgcacac
ttagcagagattgaagacagtgaagtagcaaaggtgatttcctggcatttggcaagtgat
atggattgtatagtcactttgacaacagctgctgcacgttgtatctttgatcagactcaa
ggtgcacaacaagtgttgcctcttgattctatttataagaaggattttctagattggaac
agcagacctttacctcatgaaagaaactgtttcaatcctattggaaatcctgtatttgct
agaaacttgctaatatttccagagcacaaggagagttgccaaatagtgtttgagatgctc
ttgggtaatacgattattattgacaatttggatgctgccactcattacagaaaagaggtt
gtgaaaacgacgcattgcccaactttattaacaagagaaggggacagaattcgcagtaat
ggaaagtttggaggcttccagaataaagcccctcctatagagaagcttcgggggatggtt
tttggagcacctctgccaccagcttgcaaggttatcgacctacacctagaactccttcag
gagtaccgtacagcagttttccgacttaataaattaaacactgaccttgaagaacaacta
caatcaattaatacttcagaaatgcgaagaaagaaagaagagcttgctgacgaggaaacg
aaattagcattaatagagcagaaattaggtatgacctcaagtcagtacagcagatcatca
cccccctcagaagagcttgatttgtccaaagctccaagccattcaaaaacaggaagagaa
acaaaacgttcatacagttcaaaagaatcggattcagctcctcctatgaagaaaagaata
ggaaacagcaactaa
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