Chloracidobacterium thermophilum: Cabther_B0058
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Entry
Cabther_B0058 CDS
T01629
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ctm
Chloracidobacterium thermophilum
Pathway
ctm03030
DNA replication
ctm03410
Base excision repair
ctm03420
Nucleotide excision repair
ctm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cabther_B0058
03410 Base excision repair
Cabther_B0058
03420 Nucleotide excision repair
Cabther_B0058
03430 Mismatch repair
Cabther_B0058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctm03032
]
Cabther_B0058
03400 DNA repair and recombination proteins [BR:
ctm03400
]
Cabther_B0058
Enzymes [BR:
ctm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cabther_B0058
DNA replication proteins [BR:
ctm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cabther_B0058
DNA repair and recombination proteins [BR:
ctm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cabther_B0058
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cabther_B0058
MMR (mismatch excision repair)
DNA ligase
Cabther_B0058
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cabther_B0058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
PTCB-BRCT
Rng_hyd_C
BRCT_2
AphA_like
Motif
Other DBs
NCBI-ProteinID:
AEP13064
UniProt:
G2LJP7
LinkDB
All DBs
Position
2:complement(81321..83372)
Genome browser
AA seq
683 aa
AA seq
DB search
MSDAAPTLFSESLPLTRQAAEREAAALRAEIARHDELYYQQYAPVISDYDYDQLVKRLQA
IEAEFPDLITPDSPTQRIGGRPSEGFASVPHRIRMLSLDNVYSPDELREWEARCRRTYDG
PFDYVAELKIDGISLALRYTDGLLTEAITRGDGLTGDLVTENARTIRQIPLRLAQPLAAD
IEVRGEVYLPLSAFRRLNADLEAEGEKTFVNPRNAAAGTMKLLDSRVVASRRLAMFCYEL
FADGVKPFATHWESLEWLRQAGFPVNPHARRCATLDEVLAYCAEMESQRMARDYDTDGVV
VKINPVRVQDELGATAKAPRWAVAYKFAPMQAQTRLRGVTWQVGRLGTLTPVAELEPVFV
AGTTVARASLHNEDQIQRLDVRQGDLVIVEKSGDIIPQVVGVVTAARTGAEVPVGVPEYC
PGCPERQVRLVRPEGEVAWRCPEMHCPTKLRQQVQHFASRPAMDIEGLGEVLVDKLVREG
LVTDVADLYALTAEQVAALERLGEKSAANLMAQLERSKTAGLERLIFALGIPDVGRRKAQ
LLAQHFGSLAALAAASEAELVAVRDIGPATAAHIRQWFADARHQQTVARLEAAGVVTRLD
SSGAGTTARLAGKQFVLTGTLPNLTREEATARIEAAGGRVTSAVSKKTDYVVVGENPGSK
LAKAEALGIPLLDEAGLLALLAG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgctgctcccaccctgttttcggaatctctgccattgacgcggcaggccgct
gagcgcgaagcggcagccctgcgggctgaaattgcgcgtcatgacgagttgtattaccag
cagtacgcgccggtcatcagcgattacgactacgatcagctcgtcaaacggcttcaggcc
atcgaggcggagtttcccgacctcattacgcccgatagtccgacgcagcggattggcgga
cgccccagcgaaggctttgcctccgtaccgcaccggattcgcatgctgtcgctggataac
gtctattcgcctgacgaactgcgcgaatgggaagcgcgctgccggcgcacctatgacggg
ccatttgactacgtggccgaactcaaaattgacggcatcagcctggcgctgcgctacacc
gatgggctactgacggaagccattacccgtggcgatgggctgaccggcgatctggtgacg
gaaaatgcccgtacgatccgacagattcccctgcgtctggcgcagccgctggcggctgac
atcgaagtacggggcgaggtctatctgcctctttcggcgttccggcggcttaatgccgac
cttgaagccgaaggcgaaaaaaccttcgtcaatccccggaacgctgccgccggcacgatg
aagctgctggactcacgggtggttgccagtcggcggctggcgatgttctgctatgaattg
tttgccgacggcgtcaaaccctttgccacgcactgggaaagccttgaatggctgcgccag
gcgggttttccggtcaatcctcacgcccggcgttgtgcgacgctcgatgaggtgctggcg
tactgcgccgaaatggaaagccagcggatggcgcgcgactatgacaccgacggcgtggtg
gtgaaaatcaacccggtgcgtgttcaggacgagttgggcgcgacagccaaagcgccacgc
tgggcggttgcctacaaatttgcgccgatgcaggcccagacccgcctgcgcggcgtgacg
tggcaggtcggccgtctgggcacgctgacgccggtggccgaacttgaaccggtttttgta
gccgggacgactgtggcgcgcgcttccctgcacaatgaagaccagattcagcggcttgat
gtacggcagggcgatctggtcatcgtcgaaaaaagcggcgacatcattccgcaggttgtg
ggcgtggtcacggcggcgcgcacgggggccgaggtgccggttggtgtcccggaatactgt
ccgggctgcccggagcggcaggtccggctggtgcgcccggaaggtgaggtggcgtggcgg
tgccccgaaatgcactgcccgaccaagctgcggcagcaggtacagcattttgccagccgt
ccggcgatggacatcgaagggctgggcgaagtgctcgtggacaagctggtacgggagggc
ctcgtgacggacgttgccgatctctacgccctgacggccgaacaggtcgcggcactggag
cggttgggggagaagtcggcagccaatctcatggcccagcttgaacgcagcaagacggcc
gggttggagcggctcatctttgccctggggattcccgatgtcggtcgccgcaaggcgcaa
ctgctggcgcagcacttcggctcgctggcggcgctggcggcagcttcggaggcggaactg
gtggccgtacgggacatcggtccggccacagccgcgcacatccgtcagtggtttgccgat
gcccggcatcagcagacggtggcacggctggaagcggccggggttgtgacccggctggac
tcgtccggtgcgggtacgacggcgcggctggcaggcaagcagttcgtactgacgggaact
ctgcccaacctgacgcgggaggaagcgacagcgcgcatcgaggcggctggcggacgggtg
acgagcgccgtcagcaagaagacggattatgttgtggtgggtgaaaatcccggctcgaag
ctggccaaggctgaggcgctgggcattccccttctggacgaagccgggctgctggcgcta
ctcgccggataa
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integrated database retrieval system
