KEGG   Comamonas thiooxydans: CtCNB1_2688
Entry
CtCNB1_2688       CDS       T01109                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ctt  Comamonas thiooxydans
Pathway
ctt03030  DNA replication
ctt03410  Base excision repair
ctt03420  Nucleotide excision repair
ctt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ctt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CtCNB1_2688
   03410 Base excision repair
    CtCNB1_2688
   03420 Nucleotide excision repair
    CtCNB1_2688
   03430 Mismatch repair
    CtCNB1_2688
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ctt03032]
    CtCNB1_2688
   03400 DNA repair and recombination proteins [BR:ctt03400]
    CtCNB1_2688
Enzymes [BR:ctt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CtCNB1_2688
DNA replication proteins [BR:ctt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CtCNB1_2688
DNA repair and recombination proteins [BR:ctt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CtCNB1_2688
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CtCNB1_2688
   MMR (mismatch excision repair)
    DNA ligase
     CtCNB1_2688
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CtCNB1_2688
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT Nlig-Ia BRCT_2 5_3_exonuc Zn_Ribbon_TF DUF4796_N
Other DBs
NCBI-ProteinID: ACY33434
LinkDB
Position
complement(3066314..3068440)
AA seq 708 aa
MTENLDLFSAEPQGQKPSTAINAGVPESVTSKVAALRAQLHQWAHEYYVLDTPTVPDGEY
DRVYQQLEALEGAYPALVTPDSPTQRVIGAVLDGLTPVRHAVPMLSIQTETDNEATGAIA
FDQRVRKELGLDESAAAIEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIR
TIRQIPLTLSAGRDVPPVVEVRGEVHMAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQ
LDSNIAAQRPLSFFAYGLGEITPPQQGGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASE
LVAFHERIGAERANLPYEIDGVVYKVNSLALQRQLGFKSREPRWAVAHKYPAQEMPTLME
AIDVQVGRTGKLTPVARLAPVQVGGVVVTNATLSNLFDIRKKGVRVGDQVIVRRAGDVIP
EVVGRVPGERPAYVPNFRMPKTCPICGSEVVREKGEANHRCTGGLFCGAQRKEAILHFAH
RRAMDIEGLGDKLVDQLVDAQVVRVLPDLYRLGLSSLAALDRMAEKSAQNVLAALEKSKS
TTLQRFLFGLGIRNVGESTARDLAKHFGKLDAIMDASVEELLQVKDVGPVVADSIHTFFA
QPHNREVVEQLRACGVHWEEGEPAEKAPQILAGLTVVLTGTLPTLGRDAAKDMLEAAGAK
VSGSVSKKTSYVVAGAEAGSKLAKAEELGVPVLDEAGMLALLRGEQPG
NT seq 2127 nt   +upstreamnt  +downstreamnt
atgaccgagaatttagatcttttttccgctgaaccccagggccagaagccatcgacagct
atcaatgcaggcgtgcccgaaagcgtgacgagcaaggtggcggcattgcgcgcccaactc
catcaatgggcacatgagtactatgtgctcgatacgcccacggttcccgacggggaatat
gaccgcgtctatcagcaactcgaagcactggagggggcttaccccgcacttgttacgccg
gactctcccacgcagcgcgtgatcggtgcggtgctggacggtttgactccggttcgccat
gccgtgcccatgctgagcatccagacagagaccgataacgaggccacgggtgccattgcc
ttcgatcagcgtgtgcgcaaggagctggggctggatgagtccgctgcagccatcgaatat
gtggccgagcccaagttcgatggcctggccatgaatctgcgttatgaaaacggtcgcctg
gtacaggccaccacgcgcggcgatggcgaggtgggggaagacgtcacgcacaatatccgt
accattcgccagattcccctgaccctgtccgcaggccgcgatgtaccccccgtggtggag
gtgcgcggcgaggtgcatatggccaaggccgatctggacaagctcaacgcgcgccagcag
gccgcaggtgccaagacctttgccaatccgcgcaatgcagcggccggatcggtccgtcag
ctcgactcgaatatcgcggcccagcgtccgctgtcgttcttcgcctatggtctgggcgag
atcacgccgccgcagcagggcgggccggacttcggcacgcattacgccatgctgcagact
ttgaaatcctggggctttccggttgcaccgcaagtcagtattgcgctgggcgcttctgaa
ctggtagcgtttcacgaacgcatcggtgccgagcgcgccaatctgccctatgaaatcgac
ggcgtggtctacaaggtcaacagcctggcactgcagcgtcagttggggttcaagtcgcgc
gagccgcgctgggccgtggcgcacaaatatccggcgcaggagatgcctacgctcatggag
gccatcgatgtgcaggtggggcgcacgggcaagctgacgcccgtggcccgcctggctcct
gtgcaggtgggcggtgtggtggtgaccaatgccacgctgtccaatctgttcgacatccgc
aagaagggtgtgcgcgtgggcgatcaggtcatagtgcgccgtgcgggcgacgtgatcccc
gaggtggtgggacgggtgccgggcgagcggcctgcttatgtgcccaacttccgcatgccc
aagacctgtcccatctgcggcagcgaggtggtgcgtgaaaaaggcgaggccaaccaccgc
tgcacgggcggcctgttctgtggcgcacagcgcaaggaggcaatcttgcactttgctcac
cgccgagccatggacatcgaaggtctgggcgacaagctggtcgatcagctcgtggatgcc
caggtggtgcgcgtgctgcctgacctttacaggctgggcctgagctcgctggcggcgctg
gatcgcatggccgagaaatccgcccagaacgtgctggcagccctggaaaaatccaagagc
accacgctgcagcgttttctgtttggcttgggcattcgcaatgtgggcgaatccacggcc
agggatctggccaagcatttcggcaagctcgacgccatcatggacgccagcgtggaggag
ttgctgcaagtcaaggatgtcgggcccgtggtggccgacagcattcacaccttttttgcc
cagccccataaccgcgaggtggtggagcagctgcgcgcctgcggtgtgcattgggaggaa
ggcgagccagccgagaaggcgcctcagattctggccggcctgaccgtggtgctgaccggc
accttgcccacgctgggccgcgacgccgccaaggatatgctggaggcggcgggtgccaag
gtctcgggttctgtcagcaaaaagaccagctacgtggtcgcaggggccgaggcgggcagc
aagctggccaaggccgaggagctgggcgtgcccgtgctggacgaagctggcatgctggct
ctgctaaggggcgagcagcccggttga

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