Cronobacter turicensis: CTU_30080
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Entry
CTU_30080 CDS
T00999
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ctu
Cronobacter turicensis
Pathway
ctu03030
DNA replication
ctu03410
Base excision repair
ctu03420
Nucleotide excision repair
ctu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTU_30080 (ligA)
03410 Base excision repair
CTU_30080 (ligA)
03420 Nucleotide excision repair
CTU_30080 (ligA)
03430 Mismatch repair
CTU_30080 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctu03032
]
CTU_30080 (ligA)
03400 DNA repair and recombination proteins [BR:
ctu03400
]
CTU_30080 (ligA)
Enzymes [BR:
ctu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CTU_30080 (ligA)
DNA replication proteins [BR:
ctu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CTU_30080 (ligA)
DNA repair and recombination proteins [BR:
ctu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CTU_30080 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTU_30080 (ligA)
MMR (mismatch excision repair)
DNA ligase
CTU_30080 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CTU_30080 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DUF4796_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CBA32625
UniProt:
C9XXE6
LinkDB
All DBs
Position
complement(3141088..3143106)
Genome browser
AA seq
672 aa
AA seq
DB search
MESIEEKLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQ
RVGAAPLTAFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKNTDALVYCCELKLDGLA
VSLLYEDGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQTG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHM
ARLQQFKAWGLPVSDRIRLVKTPEDVLAFYRQVEADRPTLGFDIDGVVIKVDSLELQEQL
GFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVFPTQCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNLVTALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALIN
ASIDDLQKVPDVGIVVATHVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFA
GKTVVLTGSLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEV
IDEAEMLRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaagaaaaactgactcaactgcgaaccacgcttcgccatcatgaattt
ctctaccatgtcatggacgcgccggaagtgccggatgctgaatacgatcgcctgatgcgc
gaactgcgcgcgctggaagaggcgcatccggagctggtgacgcccgattcgcccacccag
cgcgttggcgcagccccgctgaccgcgttcagccaggtgcgtcatgaagtgccgatgctc
tcgctggataacgtgtttgacgaggcgagtttcctggcgtttaacaagcgtgtgcaggat
cgcctgaaaaacaccgatgcgctggtgtactgctgcgagctaaaactcgatggcctggcg
gtcagcctgctctatgaagatggactgctggtgcgtgccgccacccgcggtgacggcaca
accggcgaagatatcacgcttaacgtgcgcaccattcgcgccattccgctgaagctgcat
ggggataacattccggcgcgcctcgaagtgcgcggcgaagtgttcctgccccagacgggc
tttgaaaagatcaacgaagaagcccggcgcaccggcggaaaagttttcgctaatccgcgt
aacgcggcggcgggttcgctgcgtcagctcgatccgcgcgtcaccgccaaacgcccgctg
accttcttctgttacggcgtcgggctgctggaaggcggcgagctgccgcgcagccatatg
gctcgtctgcaacagtttaaagcctggggcctgccggtgagcgatcgcattcgcctcgtg
aaaacgccggaagacgtgctggcgttttaccgccaggtcgaggccgacagaccgacgctc
gggtttgacattgacggcgtggtaattaaagtcgattcgcttgagcttcaggaacagctg
ggcttcgtggcgcgggcgccgcgctgggccgtggcgtttaaattcccggctcaggagcaa
ctgacgaccgtgcgtgacgtcgagttccaggtcggacgtaccggtgctattacgccggtc
gcgcgcctggaaccggtgcaggtggcgggtgtgctggtgagcaacgcgacgctgcataac
gctgatgaaattgcgcgccttgggctgcgtatcggcgataaagtggtgattcgccgcgcg
ggcgatgttattccgcaggtggtcaacgtggtgctctctgagcgcccggaagaaacgcga
ccggtggtgttcccgacgcagtgcccggtctgcggctcggatgtcgagcgtgttgagggc
gaggcggtgacgcgctgcaccggcgggcttatctgcggcgcccagcgtaaagaggcgctt
aagcatttcgtctcgcgtcgcgccatggatgtggacggcatgggcgataaaatcatcgac
cagctggttgagaaagaatatgtccatacgcctgccgatctgttccgtctgacggcgggt
aaactgaccggactcgatcgcatggggccgaaatcggcgcaaaatctggtcactgcgctg
gaaaaagccaaagaaaccacgttcgcgcgttttctctatgcgctcggcatccgggaagtg
ggcgaagcgaccgccgccgggctcgcggctcatttcggcacgctggaggcgctgattaac
gcctcgattgacgacctgcaaaaagtaccggatgtcgggattgtggtcgcgacgcatgtg
ttcaacttctttgaagaagagagcaaccgcgcggtgatccgcgatctcaccgaagaggtg
ggcattcactggcccgcgccgcaggtggtgaaagctgaagagatagacagcccgttcgcc
gggaaaaccgtggtgctgaccggctcgttaagccagatgtcgcgcgacgacgccaaagcg
cgcctcgcggcgctgggggcgaaagtcagcggcagcgtgtcgaagaaaaccgatctgctt
atcgccggtgaagcggcgggctccaaacttgcgaaagcgcaggagctgggcattgaggtc
atcgacgaggcggaaatgttgcgcctgttgggtgagtaa
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integrated database retrieval system
