Corynebacterium tuberculostearicum: I6I74_10200
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Entry
I6I74_10200 CDS
T07593
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ctub
Corynebacterium tuberculostearicum
Pathway
ctub03030
DNA replication
ctub03410
Base excision repair
ctub03420
Nucleotide excision repair
ctub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6I74_10200 (ligA)
03410 Base excision repair
I6I74_10200 (ligA)
03420 Nucleotide excision repair
I6I74_10200 (ligA)
03430 Mismatch repair
I6I74_10200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctub03032
]
I6I74_10200 (ligA)
03400 DNA repair and recombination proteins [BR:
ctub03400
]
I6I74_10200 (ligA)
Enzymes [BR:
ctub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6I74_10200 (ligA)
DNA replication proteins [BR:
ctub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6I74_10200 (ligA)
DNA repair and recombination proteins [BR:
ctub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6I74_10200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6I74_10200 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6I74_10200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6I74_10200 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
BRCT_2
DUF8512
DUF4796_N
DUF7340
Motif
Other DBs
NCBI-ProteinID:
QQU81581
LinkDB
All DBs
Position
2144649..2146709
Genome browser
AA seq
686 aa
AA seq
DB search
MTNPVDLHREWNDLAQEVRRHRNLYYNGEPAIPDADFDALFQRLLALEEEHPELAVPDSP
TQQVGAAPSAGEDIEHLERMMSLDNVFSAGEMQDWLDRTPAKTYLTELKIDGLSIDLVYR
NGRLTTAATRGDGTVGEEITANARVIEDIPHELTGTAEYPVPELIEIRGEVYMRPEDFEE
INEERAADGKDKFANPRNAAAGGLRMKDPAEVKKRRLKMVCHGLGAREGFSPTSQHDAYK
AIAAWGLPVSPYTKQVYSAKEVQDEVAHWAEHRHDAIFEMDGLVVKVDDLASQRALGATS
RAPRWAIAYKYPPEEVTTKLKNIEVGVGRTGRVTPYAVMEPVFVSGSTVEMATLHNQSEV
KRKGVLIGDTVIIRKAGEIIPEVLGPVREQRDGSEHEWTFPENCPACGTKLAPQKDGDAD
WRCPNTQSCPAQLSARLEYLASRKALDIEALGEKGAMDLIDNGILVDESELFELTAEKLL
ASDVYTAKKDTKDKRSKKEGNVKVNTAGQNLLNNLEEVKGRDFWRVLVSLSIRHVGPIAA
RALASRYGSMDKLRAAKTEELAEVDGVGMTIAQSFHDWFEVDWHRTIVDKWAAAGVAMEV
AAEDHKEQTLEGLTIVVTGSLENFTRDSAKEAIVSRGGKATGSVSKKTSYLVAGEKAGSK
EDKARELEIPILNESQFQQLLETGEA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgactaatccagttgatctgcaccgtgaatggaatgacctcgcgcaggaagtgcgccgc
caccgcaacctgtactacaacggtgagccggctattcccgacgccgactttgatgcactt
tttcagcgccttcttgcgctagaagaagagcacccagagcttgccgtgcctgattcgccc
acccagcaggtgggtgctgccccgagcgccggcgaggatattgagcaccttgagcgcatg
atgagcttggacaatgtttttagcgctggcgagatgcaggattggttggatagaacaccg
gcaaaaacttatctcaccgagctcaagattgatggcttgtctatcgacttggtttatcgc
aatgggcgcttgaccaccgctgctactcgtggcgacggcacggtgggcgaggagatcacc
gccaatgcccgcgtaatcgaggatattccgcacgagcttacgggaactgctgaataccct
gtcccggagcttatcgagatccgtggcgaggtatatatgcgccccgaggatttcgaggag
atcaatgaggaacgcgcggctgatggcaaggataaatttgccaacccgcgtaatgccgcg
gccggtggacttcgcatgaaggaccccgccgaggtgaaaaagcgccgcctgaagatggtg
tgccacggcttgggcgcgcgcgagggattttcgcccacctcacagcacgatgcctataag
gcgattgcggcttggggactgcccgtttccccgtataccaagcaggtgtactcggccaaa
gaggttcaggacgaggtggcgcactgggcagaacaccgccacgacgccatctttgaaatg
gatggtctcgtggtcaaggtggatgatttggcgtcgcagcgagcgctgggtgcgacttcc
cgcgcaccgcgctgggccattgcctacaagtatccgccggaggaagtgaccacgaagctc
aaaaacattgaggtgggtgttggtcgcaccgggcgagtaaccccgtacgcagtgatggag
ccagtcttcgtttccggatctacggtggagatggctaccctgcacaaccaatccgaggtc
aagcgcaagggcgtgctcatcggggataccgtcatcatccgtaaggcgggcgaaattatt
ccggaggtccttgggccggtgcgcgagcagcgcgatggtagcgagcatgagtggaccttc
ccggagaactgtcctgcgtgcggcacgaaattggccccacagaaggacggcgacgccgat
tggcgttgccccaatacacagtcctgtccggcgcagctctcggcacgcctggagtatctg
gcttcccgcaaggcgctggatattgaggccttgggcgaaaagggcgcgatggatctgatc
gacaacggcatcctcgtcgatgagtcggagctttttgagctcaccgcggaaaagctattg
gcctcagatgtctataccgcaaagaaggacaccaaagacaagcgctccaagaaggagggc
aacgtcaaggtcaatacggcaggtcagaacttgctaaacaacctggaggaggtcaagggt
cgcgacttttggcgagtcttggtctcgctgtccatacgacacgtgggcccgattgcggct
cgggcgcttgcctcccgctatggatccatggataagctgcgcgctgcgaagacggaggag
cttgcagaggtcgatggcgtcggcatgaccatcgcgcaatccttccacgattggttcgag
gtggattggcatcgcacgattgtggacaaatgggctgctgcgggcgtggccatggaggta
gcggccgaggaccacaaggagcagacccttgagggcttgaccattgtggttaccggcagc
ttggaaaacttcaccagggattccgcgaaagaagcgattgtctctcgcggcggcaaggct
accggttcggtgtcgaagaaaacttcgtacctcgttgccggcgaaaaggctggctcgaag
gaggataaagctcgtgagctagaaatcccgattctcaacgagtcgcaattccagcaacta
ctggagaccggagaagcctaa
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integrated database retrieval system
