Cyprinodon tularosa (White Sands pupfish): 119785636
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Entry
119785636 CDS
T07496
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04115
p53 signaling pathway
ctul04145
Phagosome
ctul04148
Efferocytosis
ctul04350
TGF-beta signaling pathway
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119785636 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119785636 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
119785636 (thbs1b)
04148 Efferocytosis
119785636 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
119785636 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
119785636 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119785636 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ctul04131
]
119785636 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119785636 (thbs1b)
Membrane trafficking [BR:
ctul04131
]
Endocytosis
Phagocytosis
Opsonins
119785636 (thbs1b)
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119785636 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
EGF
TSP1_CCN
cEGF
Laminin_G_2
VPS51_Exo84_N
Motif
Other DBs
NCBI-GeneID:
119785636
NCBI-ProteinID:
XP_038144303
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MKVAGIFLLLMLWTCEGARVAESREDNSVFDLFELIRIPSKNHGVSLVKGDDPYSPAYRI
LNPDLIPPVPESAFRDLVDSVQAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGVVFEIIS
NGKANTLDIVYSTEKKQQVVSIEEVDLATGHWKNITLFVQEDRAQLFTGCEEVNTAEMDA
PIQNILTQGTPAGARLRVGKGAVKDKFMGVLQNVRFVFGTTLDAILRNKGCQKAAPGETM
IANNLNGSSAIRTEYIGHKTKDLQMVCGFSCEDLISMFKELKGLGVVVKELSTELRQLTN
ENKLIRTHMGIHSGICFHNGIKHNNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNVCEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGRDCVGEGRQT
EKCRMSPCPINGNWGPWSPWGTCTLTCGGGVQTRKRLCNDPAPKHGGKECVGDAIDKQMC
NKKACPIDGCLSNPCFSGAKCSSFPDGSWKCGKCPIGYTGNGIRCKDVDECKEVPDACFE
FNGVHRCENTEPGYNCLPCPPRYSGPQPFGKGVEQAAANKQVCTPQNPCLDGSHDCNKNA
RCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDDDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYIYNVDQRDTDLDGVGDMCDNCPLENN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
SIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTAGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggcagggatatttttgttgttgatgctgtggacctgtgagggtgcgagagtc
gcagagagtcgagaagacaacagtgtgtttgatttgtttgagctcatccgaatcccgagc
aagaaccacggggtaagcctggtgaaaggagacgacccatacagccccgcctacaggatc
ttaaacccggaccttattccccctgtccccgagagcgccttcagggacctggtggactcg
gtccaagcagagagaggtttcctccttctgctcaacttcaagcagtttaaacggacgagg
ggcagccttctgaccgtggaaaagcgagacggctccggagtcgtctttgagatcatctcc
aatggcaaagccaacaccttggacatcgtttactccactgagaaaaagcagcaggtggtt
tccatcgaggaagtggatctggccacgggtcactggaagaacatcacgctgtttgtgcag
gaggaccgcgcgcagctgtttacgggatgcgaggaggtgaacaccgctgagatggatgcg
ccaatacagaacatcctgacgcagggaacgccggccggcgcgcggcttcgggtcggcaag
ggggcagtgaaagacaagttcatgggggtgttgcaaaacgtgcggtttgtgtttggaaca
acgctggatgcgatcctgcgcaacaaaggatgccagaaggctgctcctggtgaaacaatg
attgcgaataatctgaatggctcatccgccatccgaacagagtacattggacacaagact
aaagatctacagatggtctgtggcttctcctgtgaagatctcatcagcatgttcaaggag
ctgaaaggccttggtgtggttgtcaaagaactgtccactgagctccgccagctgacaaat
gagaacaagcttattagaacccacatgggcatacatagtggcatctgcttccacaatggc
attaaacacaacaacaaagatgagtggaccgtagatgactgcactgagtgcacttgccag
aactctgccactgtgtgtaggaagatctcttgccctctgataccctgtgctaatgctact
gttccagatggggagtgctgtccacgatgtggaacaccgagtgactatgcagaggacggc
tggtcgccctggtctgaatggacccattgttctgtgtcatgtgggcggggcatccagcag
cgagggcgctcttgcgaccgtatcaataatgtctgcgagggcacctctgtgcaaacccgt
gattgctatcttcaggagtgtgataaacgcttcaagcaagacggaaactggagtcattgg
tccccctggtcgtcatgctctgttacctgtggtgctggtgtcatcactcgtatccgcctc
tgcaactctcccacccctcagctgggaggcagggactgtgtgggagagggcagacaaaca
gaaaagtgcaggatgtctccatgtccaattaatgggaactggggaccctggtcaccttgg
ggtacatgcaccctcacctgtggtggtggagtacaaacccgtaaacgcctttgtaatgat
cctgccccaaagcatggcggtaaagagtgtgttggagatgcaatagacaaacagatgtgc
aataagaaagcttgccctatagatgggtgcttgtccaacccctgcttttctggggccaag
tgcagtagtttccccgatggttcctggaagtgtggaaaatgccccatcggctacacaggc
aatggcataaggtgtaaagatgttgatgagtgcaaggaggtcccagatgcttgctttgaa
ttcaatggcgtacaccggtgtgaaaacacagagccgggatacaactgtctcccctgcccc
cctcgctactcgggaccccaaccgtttggcaaaggtgtggagcaagctgctgctaacaaa
caggtatgcacaccgcaaaatccttgcctagatggaagccatgattgtaacaaaaacgcc
cgctgtaactacctcggacacttctccgatcccatgttccgctgcgagtgtaagcctggt
tatgctggcaacggtcatatctgtggggaggatacagatttggatggatggcccaatgct
gatttggtgtgtgtggaaaatgctacttaccactgcaaaaaggacaactgtcccaatctt
ccaaactcagggcaggaagattatgataaggatggaattggagatgcatgtgatgacgat
gatgataatgatggcattcctgatgacagggacaactgtccgttcgtgtacaatcccagg
cagtatgattatgaccgcgatgacgttggggaccgctgtgacaactgcccttacaatagt
aatccagaccagacagacacagacaacaacggcgagggcgatgcctgtgctgtggacatc
gatggagatggaatactgaatgaaaaagataactgtccctatatatacaatgttgaccaa
agagacacagatctggatggagtgggagacatgtgtgataactgtcctctggaaaataat
cccgatcaggtggattcagatgatgatcgagtgggagacaagtgtgacagtaaccaggac
atcgatgaggatggacaccaaaacaacctggacaattgtccatacatccccaatgccaat
caggctgatcacgacaaggatggtaagggagatgcctgtgaccatgatgatgataacgac
agcatccctgatgacaaagacaactgtagactggcattcaaccccgaccagctggattct
gatggcgatggccgtggagatgcttgtaaggatgattttgatcaagacaacgtgcctgat
atctatgacgtgtgtcctgaaaactttgatatcagtgagacggacttccgcaagttccag
atggttcctttggatccaaaaggcacctcccagattgatcccaactgggtcgtccgtcat
caaggcaaagagctggttcagactgtcaactgcgatcctggtattgcagtcggttaccat
gagttcaactccgtggacttcagtggaactttctttataaatacagagagagatgacgat
tatgctggctttgtgtttggctaccagtctagttccaggttttatgtcgtgatgtggaag
cagatcacacagacatactggtcaagtaagcccaccaaggcccagggctactcaggcctg
tccatcaaagtggttaactcaaccaccggcccaggagagcacctcagaaatgccctctgg
cacacaggcaacactgcaggacaggtccgcactctctggcatgaccctaaaaatgtcgga
tggaaagacttcactgcctacaggtggcatttgatccacaggccgagaacaggacttatt
agagttgtgatgtatgagggtaaaaagataatggcagattctggtagcatctatgacaag
acgtatgcaggtggcaggctaggtctttttgtcttctcacaagagatggtttatttctca
gaccttaagtatgaatgcagagatgcataa
DBGET
integrated database retrieval system
