Cyprinodon tularosa (White Sands pupfish): 119786485
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Entry
119786485 CDS
T07496
Symbol
agrn
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04512
ECM-receptor interaction
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119786485 (agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119786485 (agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ctul00535
]
119786485 (agrn)
Proteoglycans [BR:
ctul00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
119786485 (agrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
SEA
Laminin_EGF
EGF
CFAI_KAZAL
Laminin_G_3
hEGF
Motif
Other DBs
NCBI-GeneID:
119786485
NCBI-ProteinID:
XP_038145816
LinkDB
All DBs
Position
Unknown
AA seq
2085 aa
AA seq
DB search
MAPLRTLRVGRAALLLAGLLLGPLWSPCAASCPEKELEDREEEANVVLTGTVEEIYDVNP
VLNTYYCKVRVWRYLKGKSTISQEFLRDGGNKVKIGGFGNSLICDNQVATGDTRIFFLNI
DQKNELMLNSSLMRITLRNLEEVEHCVDAHKYIIADKPSHFTPAQPPDGCRGKLCGFGAV
CERDPSDPAKGECVCKKFECPLMVAPVCGSDTSTYSNECELEKAQCEKQRRIKVQRKGPC
SLKDPCTEVTCSYGSTCVKSSDGMSAKCMCPLSCEGKPQQAVCGSDGKDYRNECELHQHA
CKTQKNIRVQFQGPCDPCKDSQNSLNTICRVNAMTRQREIYKSPESCSEDKEPLCASDGQ
TYFSECAMIATGFQKGISLRKIHSGQCRNLDVCQEDCLFNAVCVVEKFGARCSCDPIECD
ATYKPLCVKDGRTFSNDCHRRKAECMGKNLLPIKHYGPCDLNSPSPCLMKTCEHGAVCVV
KNNEPVCECTEACPQISDPVCGSDGQTYSSPCEMRAMGCTLQKQIRIQHKGPCDESCTNC
SFGAICDAQSGQCVCPSECVESHQPVCGSDGHTYGSECELNVRSCKEQMELRVVSQGECK
TCGSTVCSWGARCVEKKCECPQCSGEATSPVCGSNGITYDNECELHRSSCTQKMKIDVAK
PGSCEEECGSGASGSGVESCEQERCAMHGGQWNDDEEDERCICNFSCESVPHNEVCGSDG
KTYRNECELKNTRCLEKRQLLIQSQGPCAENPPAPPTELTAPQHCSLSPYGCCSDNATAA
LGVGQAGCPSTCQCNVHGSYKGTCDPTSGQCSCKPGAGGQKCDRCEPGFWNFRAIVTEGM
SGCTPCSCDPTGSVRDDCEQMSGLCSCKTGVKGLKCNVCPDGRKIGMNGCDNGPDAPKSC
EELVCSFGATCIEENGQAHCQCPPPDCDLRNKTKVCGSDGVTYADQCQLRTIACRQDKDI
TLQHFGQCTETISEPADRPTPNPPSTTTAAATTTPAPFNPDMVFAIPPPMTAQPGPTEQP
VTNAVLSTSTISRARSNHRQPILTAAITATLSSPAPSTSALTPLEGSGSGEPSGDEDEED
LRDDDIGSGIQSEASGADETGGPTAAGSAGPNSEDKSSCDTTEFGCCPDGKTPSSTPEGT
NCPPLYATASFWDDSGSATMRFSGLLHLEQVDNLVYTPEMQDPKSELFGETARSIESALN
EMFRKSQVHKEFMGVRVRQLAQNDSILAYVEVHFRPDTRYNVKDIKGALLKQLKASKDTS
LSVKKPTAENIHFTNYGLSTIPLFTTTTTTTAAVTTAAPITTSRAPATSPYFTRRPEGIT
RRFPGGRRTTTTAPPVIRTSTTTSAHHPTTTQPPANTTPRKGTTPKTLKPCDSHPCLHGG
TCEDDGDEFRCQCLAGRGGAVCEKVIKYFIPSFGGQSYLAFPTMSAYHTARIAMEFRASE
MNGLLLYNGQMRKKDFISLALVNGRVELKFNTGSGTGTVISKVQITPGRWHQLVVTRSRR
SGMLSVDGEPHVQGESPPGTDGLNLDTQLFIGGVTDDLKQDVKERTGVTSGLVGCIRMLD
VNNRMLNIQESNGDSLFGAGVGECGNNPCQPNPCKNGAECQVKEAEMFHCKCSNGFWGPT
CADVHDPCKDSKCHSSSKCKALPAGGYKCECPMGREGKHCDKATETRGAYMPLFNGDSYL
ELKGLHLYGHSLRQKFSMTLVLMANDSNGLIFYNGQKSDGNGDFISLSLKQGFLEFRYDL
GKGPAVIRSRTPMKLKVWNTIDLERSVRKGELMVNKKDPVRGESPNKHTELNLKESLFVG
GAPDYSKLARAAALEQGFKGTIQKIMLMSTPILREENALNSSNVAMFRDHPCFREPCQNG
GRCNPQLGGYECSCQTGFSGDSCQNTIHEKSAGETEAIAFDGRTFIEYHNAVTRSQLTNE
IPDEKALLVNKFELSIRTEATQGLLLWSGKGVERSDYIALAIVDGHVQMTYDLGSKPVVL
HSSVRVDTNRWIRIKASRALRDGSLQVGNEAAVTGSSPLRATQLDTDGALWLGGLEELAV
ARRLPKAYSTGFVGCIKDVVVDGVEVHLVEDALNSPKILHCSAAK
NT seq
6258 nt
NT seq
+upstream
nt +downstream
nt
atggctccgctgcggacactccgggtcggccgcgcagcgctgctcctggcggggctcctc
ctggggcccctgtggtccccctgcgccgccagctgcccggagaaagagctggaggacagg
gaggaggaagccaacgttgtcctgaccggaaccgtggaagaaatatacgacgtgaacccg
gtgctgaacacctattactgcaaggtcagagtgtggcgttacttaaaagggaagtcgacc
atcagccaggagttccttcgcgacggaggcaacaaagtgaagatcggcgggtttgggaat
tctctcatctgtgacaaccaggtggccaccggcgacactcgcatattttttctcaacatc
gaccagaagaacgagctgatgctcaactcaagcttgatgaggattacgcttcgcaacctg
gaggaagtggaacactgcgttgatgctcacaaatacattattgcagacaaaccatctcac
ttcactccggcccagcctcctgatggctgcagaggaaagctgtgtggcttcggggcggtg
tgtgagcgggacccgtccgacccagccaagggcgagtgcgtttgtaagaaattcgaatgt
ccactcatggtggctcctgtttgcggctccgacacctccacctacagcaacgagtgcgag
ctggagaaggctcagtgcgaaaaacagcgacgcatcaaggtgcagcgcaaaggaccctgc
tctctgaaggacccctgcacggaggtgacatgtagctacggcagcacgtgcgtcaagtcg
tcggacggcatgtcggcgaagtgcatgtgccccctcagctgcgaaggcaagccccagcag
gcggtgtgcggcagcgacgggaaggactaccgcaatgagtgtgaactccaccagcacgca
tgcaagacccagaaaaacatacgagtgcagttccaaggaccctgcgatccttgcaaagac
agtcagaacagtctaaacactatctgtcgagtgaatgccatgacccgccagcgtgagatc
tacaagtcaccagagtcctgttctgaagataaggagcctctgtgcgcaagcgacggccag
acatacttcagcgagtgcgccatgatagccacaggctttcagaagggcatcagcctcagg
aagatccattctggccaatgcagaaatctggatgtgtgtcaagaagattgtctattcaat
gccgtgtgtgtggtggaaaagttcggtgcccgctgctcctgtgatcccatcgaatgcgac
gccacctacaagccactgtgcgtcaaggatggacgcactttctccaatgactgccaccga
cgcaaggcggagtgcatgggcaagaacctcctccccatcaagcactacgggccctgtgat
ctcaactcacccagcccctgcttgatgaagacatgcgaacacggggcggtgtgcgtcgta
aagaacaacgagccggtctgcgagtgcaccgaggcctgcccccagatctccgacccggtg
tgcgggtccgatggccaaacctatagcagcccctgtgagatgcgggcgatgggttgcact
ctgcagaagcaaatccgcatccagcacaaaggaccatgcgatgaatcttgcaccaactgc
tccttcggggcgatctgtgacgcccagagcggtcagtgcgtgtgcccatccgagtgtgtc
gagtcccaccagcccgtttgcggcagcgacggccacacctacggcagcgagtgtgagctg
aatgtgcgctcctgcaaggagcagatggagctgcgggtggtcagccagggagagtgcaaa
acatgcggcagcaccgtctgtagctggggtgcccggtgtgtggagaagaagtgcgagtgc
ccgcagtgctcaggcgaggccacctctccggtgtgcggcagtaacggcatcacctacgac
aacgagtgcgagctccacaggtcgtcctgcacgcagaagatgaaaattgatgtggcgaag
cccggcagctgcgaggaagaatgtggctctggagcatctgggtcgggcgtggagagctgc
gaacaggagcgctgtgccatgcatggtggccaatggaacgacgatgaagaggatgaacgc
tgtatctgcaacttcagctgtgaaagtgtgccacacaacgaggtgtgcggctctgatgga
aaaacctacaggaacgagtgcgaactaaagaacaccagatgtttggagaagaggcagttg
ttgattcagagtcagggaccctgtgcagagaatcctcccgcacctccgactgagctgaca
gcgccgcagcactgcagcctctctccgtacggctgctgctccgacaacgccaccgccgct
ttaggggtcgggcaggctggatgtcccagtacgtgtcagtgtaacgtccacggctcctac
aagggcacctgcgacccgaccagcgggcagtgctcctgtaagccgggcgccggcgggcag
aaatgtgaccgctgcgagccgggcttctggaacttccgcgccatcgtcaccgaaggcatg
agcggctgcacaccgtgcagctgcgatcccacaggctcggtccgggatgattgcgagcag
atgtcgggactgtgctcttgcaagacgggggtgaagggcttgaagtgcaacgtgtgccca
gatgggaggaagatcggcatgaacggctgcgacaacggtccagacgccccaaagtcgtgt
gaagaactggtttgcagcttcggtgcaacctgcatcgaggaaaacggccaggcccattgt
cagtgccctcctcctgattgtgacttaagaaacaaaacaaaggtgtgcggctcagatggg
gtgacctacgccgaccagtgccaactgaggaccatagcctgcaggcaggacaaggacatt
acgttgcaacactttggacagtgcacagaaaccatctctgaaccggcagaccgacccacc
cccaaccctccctccaccaccaccgcggcagccaccaccacccccgcccccttcaaccct
gacatggtgtttgccatcccgcctccaatgacggcccagccggggcccaccgagcagccc
gtgaccaacgccgtactttccacctccaccatcagccgtgcacgatccaaccaccgtcag
cccatcctcaccgccgccatcaccgccactctcagcagtcctgccccctccacctccgca
ctgacccctctcgagggctcaggcagcggcgaaccgagcggcgacgaagacgaagaggat
ttgcgggatgacgatattggtagcggcatccaatcagaagccagcggggcagacgagact
ggcggtccgacagcggcaggttctgctggtcccaattctgaggataagtcctcctgtgac
accacagagttcggctgctgtcccgacggcaagaccccgtccagcaccccagagggcacc
aactgcccccccctttatgccacagccagcttttgggatgattctggatctgctaccatg
aggttctcgggtttactgcacctggagcaggtggataacctggtctacacccctgagatg
caggatccaaagtctgagctgtttggagagacggcccgcagcatagagagcgctctcaat
gaaatgttcaggaagtcacaggtgcacaaagaattcatgggagttcgagtccgtcagctg
gcacaaaacgactccatcctggcctacgtggaggtccatttcaggccagatacgagatac
aacgtgaaggacatcaagggagcgctgctgaaacagttaaaggcttccaaagacaccagc
ctctctgtgaagaagcccacggcagagaatattcacttcactaattatggtttatccacc
atcccattgtttaccaccaccaccaccaccacagctgcagtcaccaccgccgcccccatc
accacatccagagctcctgctacatccccctacttcacacgccgcccagaaggaatcacc
cgcaggttccccggcggcaggcgtaccaccaccacagcgccgccggtcatcagaacctcc
actaccacctcagcacatcaccccacaaccactcagccgcccgccaacaccacaccaaga
aaggggactacacccaagaccctaaagccctgcgactcccacccgtgtctccatggtggc
acctgcgaggacgacggcgacgaattccgctgccagtgcctcgctggacgaggaggggcg
gtgtgtgagaaagtgatcaagtacttcatcccgtcgtttggaggccagtcctacttggcc
ttcccgacgatgagcgcataccacacggcccggatcgccatggagttcagagcgtccgaa
atgaacggcctgctgctctacaacggccagatgaggaagaaggacttcatctctctggct
ctggtcaacggcagagtggagctcaagtttaacactggatcgggaacaggcaccgtgatc
agcaaggttcagatcaccccgggacgctggcatcagctggtggtgacgcgcagccggcga
agcggcatgctcagcgtcgacggtgagccgcacgtccagggtgagagtcctcccggtact
gatgggctcaacctcgacacccaactgttcattggaggggtgacggacgacctgaagcaa
gatgttaaggaaaggaccggggtcacctcaggtctggttggctgcatccgcatgctggac
gtcaacaaccggatgctcaacattcaggagagcaacggcgacagcctctttggcgccgga
gtgggtgaatgtggtaacaacccctgccagccgaacccctgcaagaacggagccgagtgc
caggtcaaagaggctgagatgttccactgcaagtgcagcaatggattctggggtccaacg
tgtgctgacgtccatgacccctgcaaagacagcaagtgccacagttcctccaagtgcaag
gcgctcccagcgggaggctataaatgcgagtgtcccatgggacgtgagggaaagcactgt
gacaaagcgactgagacgagaggggcttacatgcctctgttcaacggagactcctaccta
gagctgaaggggcttcatctctacgggcacagtctacgtcaaaaattcagcatgacgttg
gttcttatggccaatgactccaatggtctgatcttctacaacgggcagaagtctgacgga
aatggggacttcatctctctgtccctgaaacaaggcttcctggagtttcgctacgatctg
ggaaagggacctgctgttatcaggagtaggaccccgatgaagctgaaggtgtggaacacc
attgacctggagcgctccgtccgcaaaggagagctcatggtgaacaagaaggacccggtt
cgaggagagtcaccaaacaagcacactgaactcaacctgaaagagtctctctttgttggc
ggagctcccgattacagcaagctagcgagagctgctgcgctcgagcagggattcaaggga
accatccaaaagattatgctgatgagcacccccatcctcagggaggagaacgccctgaac
tccagcaacgtagccatgttccgtgaccacccgtgtttccgggagccatgtcagaacggc
ggccgctgcaatcctcagctgggcggctacgagtgctcttgccaaaccggtttctcaggg
gacagctgtcaaaacaccatccacgagaagtccgccggagagaccgaggccatcgccttc
gacgggcggacgttcatcgagtatcacaacgccgtcaccaggagccaactgaccaatgag
atcccagatgaaaaggctctgctggtgaacaaattcgagctgagcatccgcaccgaggcc
actcagggcttactgctctggagcgggaagggtgtggagcgttccgactacatcgcgctg
gccatcgtggatgggcacgtccagatgacgtacgacctgggatctaagcccgtggtgctg
cactcttctgtgcgtgtcgacaccaaccgctggatacgcatcaaagccagcagggcgctt
cgggacggctctctgcaggttggaaacgaggcggcggtaacagggtcatctcccttacga
gcaacgcagctggacacagatggagccttatggttaggtggtctggaggagctggccgta
gcccgccgcctgcccaaggcctacagcaccggcttcgtcggctgcatcaaggacgtggtg
gtggacggcgtggaggtccacctggtggaggacgccttaaacagcccgaaaatattacac
tgttccgctgccaaataa
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integrated database retrieval system
