Cyprinodon tularosa (White Sands pupfish): 119787521
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Entry
119787521 CDS
T07496
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04115
p53 signaling pathway
ctul04145
Phagosome
ctul04148
Efferocytosis
ctul04350
TGF-beta signaling pathway
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119787521
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119787521
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
119787521
04148 Efferocytosis
119787521
09143 Cell growth and death
04115 p53 signaling pathway
119787521
09144 Cellular community - eukaryotes
04510 Focal adhesion
119787521
09142 Cell motility
04820 Cytoskeleton in muscle cells
119787521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ctul04131
]
119787521
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119787521
Membrane trafficking [BR:
ctul04131
]
Endocytosis
Phagocytosis
Opsonins
119787521
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119787521
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CFP_C
TSP1_ADAMTS
cEGF
EGF_CA
TSP1_CCN
EGF
Motif
Other DBs
NCBI-GeneID:
119787521
NCBI-ProteinID:
XP_038147356
LinkDB
All DBs
Position
Unknown
AA seq
1172 aa
AA seq
DB search
MMLSGIVFLFLLWSCQGARLAESRDDNSVYDLFELAKVSKKHNGVSLVKGIDPYSPAYKV
LNADMIPPVPDASFRDLLDSIQAERGFLLLLNLKQFKKTRGGLLTVEKTDGSGPIFEIIS
NGKANTLDLVYSTERQQHLVSIEDAGLANGHWKNLTLFVQEDRAQLFVGCEEINVSELDV
PIQTLLSREVADRARLRIGKGAVKDKFMGVLQNVHFVFGTTLDAILTNKGCKSGAALTQM
MTLDNPVNGSSPAIRTDYTGHKSKDLQTVCGFSCDDIASMFKELRGLNVIVKQLSNELQK
VSTDSELLKNQINIHRGICIHNGIVHQDKDEWTVDGCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTPSDYAEDGWSAWSDWTHCSVTCGRGIQQRGRSCDRINSKCEGTSV
QTRDCYLQECDKRFKQDGGWSHWSPWSSCSVTCGEGVMTQIRLCNSPTPQMGGRDCQGEG
RHTKVCQMSPCPINGGWGPWSPWDTCSATCGGGIQTRNRLCNDPVPKYGGKDCVGDATMV
QVCNKQDCPIDGCLSNPCFPGTKCTSFRDGSFKCGKCPLGYTGNGVTCTDIDECKEVPDA
CHYHNGVHRCENTEPGYNCLPCPARFSGPQPFGRGVEQAIAKKQVCTPRNPCKDGSHNCH
KNANCIYLGVYSESMFRCECKPGYAGNGRICGEDSDLDGWPNTDLPCVENATYHCKKDNC
PNLPNSGQEDHDKDGFGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDEVGDRCDNCV
FEANTDQTDTDNNGEGDACAIDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL
EHNPDQIDSDADRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNVLDIHDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNI
YDKTYTGGRLGLYVFSQEMVYFSDLKYECRDS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgagcggcatcgtttttctgttcttgctttggagttgccaaggtgctagattg
gcagagagtcgcgatgataacagtgtgtatgatctatttgaactggcaaaagttagcaaa
aaacataatggagtgagtctggtcaaaggcatagatccatacagccccgcatacaaggtc
ctgaatgcagacatgatcccccctgttcccgacgcctccttcagggacctactggactcc
atccaggcagagcggggttttctcctcctgctcaacctgaagcagttcaagaaaaccaga
ggaggtctgctgaccgtggagaaaactgacggatccggacccatcttcgaaatcatatct
aatgggaaggcgaacacgcttgacctggtctattccaccgagaggcagcaacatttggtt
tccattgaggatgcaggcttggccaatgggcactggaagaacctcacactgttcgtccag
gaggacagggcacagctttttgtgggatgtgaagagatcaatgtgtcagagttggatgtg
ccaatccagactttactgtccagggaggtggcagatagagccaggctgaggattgggaaa
ggagcagtgaaggacaagtttatgggggtgcttcagaatgtccatttcgtcttcggaacc
actctagatgccatattaaccaataagggatgtaaaagtggagctgccttaacacaaatg
atgaccctggataatccagtcaatggttccagccctgccattaggacagattatactggc
cacaaatccaaagatctgcagactgtctgtggtttctcatgtgacgacatcgccagcatg
tttaaggagctcaggggactcaatgtgattgtcaagcagctgtcgaatgaactccaaaaa
gtgtctacagatagcgaattactgaaaaatcagataaacattcatagagggatctgcatc
cataacggcattgtgcaccaagacaaagatgaatggacagtggatggctgcacagagtgc
acctgtcagaactctgcaaccgtgtgtcgcaaaatatcctgtcccctcatcccctgtgcc
aatgctactgtgcctgatggggaatgctgccctcgctgtgggacacccagtgattatgca
gaggatggctggtctgcctggtctgactggacccattgttctgtgacttgtggtcgtggc
atccagcagcgtggacgttcctgtgaccgcatcaacagcaagtgtgagggcacctctgtc
cagacccgtgattgctacttgcaagaatgcgacaagcgatttaaacaggacggaggctgg
agccactggtcaccctggtcttcgtgctctgtgacctgtggtgaaggggtcatgacacag
atccgcctctgcaactccccaacgccgcagatgggtggcagagactgccagggagaggga
cgtcacaccaaagtctgccagatgtcaccctgccctattaatggaggatgggggccttgg
tcaccatgggatacctgttctgcaacctgtggtggaggaatccaaacaagaaatcgtctc
tgcaatgatcctgttcccaaatatgggggaaaggattgtgttggcgatgctaccatggtt
caagtttgcaacaaacaggactgtcctattgatggttgtctttccaacccttgtttccct
ggaacaaaatgcacaagcttccgtgacggctcattcaagtgtggcaagtgcccacttggt
tatactggtaatggggtcacctgcacggacattgatgaatgtaaagaggtcccggatgct
tgccattatcataatggagtccatcgttgtgaaaacactgagccaggttacaattgcctc
ccctgtcctgcacgtttctctggtccccaaccctttggaagaggagtggaacaggcaatt
gctaaaaaacaggtttgcactccccgcaacccttgcaaggacggtagccacaactgccat
aaaaatgcaaattgcatatatttgggcgtgtactccgagtcaatgttccgctgtgaatgc
aagccaggatatgctgggaatgggcggatttgcggagaggacagtgacctggatggatgg
cctaacactgatctgccatgtgtggagaacgccacttatcactgcaaaaaggataactgc
cccaaccttcccaactctgggcaagaagaccatgacaaagatggctttggggatgaatgt
gaccatgatgatgacaacgatggaatccccgatgatagggacaactgtcccagagtgtac
aaccctgcccagtatgatgcagacagggatgaggttggtgatcgctgtgacaactgtgtg
tttgaggctaatactgatcaaacagacacagacaacaacggagaaggtgatgcatgtgcc
atcgacattgatggtgacggcattctaaatgagaatgacaactgcccatatgtgtacaac
gtcgaccagagagacacagacagggatggcgtgggagatcactgtgataactgtcccctc
gaacacaacccagaccagattgactctgatgcagatcgtgttggagacaaatgcgataac
aaccaggacattgacgaggatggtcaccagaacaacttggataactgcccctacatcccc
aatgccaaccaggcagaccatgacaaagatggcaaaggagatgcttgcgaccatgatgat
gacaacgacggtattcctgacgataaagataactgcagactggcctttaatcctgatcaa
ctggattctgatggtgatggtcgtggagatatctgcaaggatgattttgaccaagataat
gtccttgatatccatgatgtgtgccctgagaactttgccatcagtgaaaccgatttccga
agattccaaatggttcccttggatccgaaaggcacctctcagattgaccccaactgggtg
gtcaggcatcaaggcaaggagctggtgcagactgtcaactgtgaccccggcattgctgtc
ggttatgatgagttcagtgccgtggatttcagtggaacattcttcatcaacactgacaga
gatgatgactatgccggttttgtgttcggctatcagtccagctcccgcttctacacagtg
atgtggaaacagatcacacagacctactggtctcacacacccactagagctcaaggttac
tctggtttgtcaattaaagttgtgaactccaccacggggccaggcgaacacctcagaaat
gctctgtggcacactggagacaccccaggacaagtccgtactctgtggcacgaccccaag
aatatcggctggaaggactttaccgcttatagatggcaccttacccacagacccaagact
gggcttattagagtggtcatgtatgaaggcaagagaatcatggctgattctggaaacatt
tatgacaaaacatacactggtgggcgactaggcttgtatgtcttctctcaggagatggtt
tacttctcagacctcaaatatgaatgtagagattcataa
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