Cyprinodon tularosa (White Sands pupfish): 119790765
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Entry
119790765 CDS
T07496
Symbol
slit1a
Name
(RefSeq) slit homolog 1a isoform X1
KO
K06838
slit 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119790765 (slit1a)
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Axon guidance molecules
119790765 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRR_1
LRRNT
hEGF
LRRCT
EGF_TEN
LRR_9
LRR_14
EGF_Teneurin
LRR_EndoS
EGF_DL_JAG
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
119790765
NCBI-ProteinID:
XP_038152407
LinkDB
All DBs
Position
Unknown
AA seq
1548 aa
AA seq
DB search
MRMLAVGSSFGSSMGGLAGHWMWLLMLSALMLGNAIACPALCTCSGTTVDCHGLGLKTMP
RSIPRNTERLELNGNNLTRITKSDFAGLKYLRVLQLMENQITVIERGAFDDMKELERLRL
NRNQLQQLPELLFQKNPGLSRLDLSENFIQSIPRKAFRGATDIKNLQLDKNHISCIEDGA
FRALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLSQWLRQRPTI
GLFTQCASPAELRGLNVAEVQKHEFTCSGHQESSSPQPCSSGGGSCPAMCTCSNNIVDCR
GKGLTAIPANLPDSMSEIRLEQNGIKSVPPGTFSPYKKLRRIDLSNNQISEIAPDAFQGL
RSLNSLVLYGNKITDLPKGVFDGLYSLQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNK
IQTLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKR
IGQIKSKKFRCSAKEQYVIPGTEDTRLNNACNTDPVCPPKCRCESNVVDCSNLKLTKIPE
HIPASTAELRLNNNDITTLEATGVFKNLSQLKKINLSNNKITEIVDGAFEGASSVIELHL
TANQIDSVRSGMFRGLEGLRMLMLRNNKISCVHNDSFTGLHNVRLLSLYDNHLTSITPGA
FDTLQTLSTLNLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVAMPD
FRCEEGQEESSCVPRPQCPSECTCLETVVRCSNKHLHTLPKGIPRNVTELYLDGNQFSIV
PKELSSFKYLQLVDLSNNKINTLSNSSFANMSQLTTLILSYNSLRCIPKMAFSGLHSLRL
LSLHGNEISELPDGIFNDVTSLSHLAIGANPLHCDCHLRWLSDWVKTGYKEPGIARCAGP
QGMESKLLLTTPAKKFECTGNVDTSVLAKCNPCLSSPCLNHGICHNDPVEIYRCNCPPGF
KGKNCETALNACVSNPCANGGTCQVNEDDEGEYRCSCLLGFEGPTCQINVDDCEDNDCEN
GATCIDGINNYTCFCPPYYTGEMCEELEDMCAPGRSPCQHQSTCLISTSGPKCVCSPGYV
GDDCSINYDDCRENRCQNGAQCVDELNGYSCICPEGYSGQLCEVPPSRLSLCELADCQNN
APCVERGGRALCQCPPEFGGPRCEKLVSVNFVDRDSYLLLSDLENWPQANITLQVSTAED
NGILLYNGDNDHIAVELFQGHVKVSYDPGSQPGHAIYSTETINDGQFHTVELVTFDQMVN
LSIDGGLPTTMDSFGAVRPLNGEAPLYVGGRGPLQNTPPSSAGMPVDVHSGTFRLWQIQN
GSSFHGCIQNLYINNELQDFTKTQMKPGVVPGCEPCKKLYCVHGICQPDGLLGPVCHCQP
GWSGAHCDQPALNPCQGSKCVHGKCIPLDSQSYRCECEEGYRGALCNQQGELFNPCHRLS
CKHGRCQISDSGEAYCHCESGYTGELCDAEFECRGEPVRDFYQVQRGYAICQTTRMVSWV
ECTGACDTGSCCISQRMKRRKYTFECSDGTSFTEEVEKTIKCGCVGCM
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atgagaatgctggctgtaggtagcagttttggatcaagcatgggtgggctggctgggcac
tggatgtggctgctgatgctctctgccctgatgttgggcaatgcaatcgcctgcccagcg
ctttgtacctgcagcggcaccacagtggactgccatggactgggtctcaaaactatgcca
aggagtatcccccgcaacactgagagactggagctgaacggaaacaacctcacacgcatc
accaagagtgactttgctggcctgaagtacctcagagttctacagctgatggagaatcag
attacagttatcgagcgaggggcttttgatgacatgaaggagctggagcgactgcggctg
aaccgtaatcaactgcagcagcttccggagctgctgtttcagaagaaccctggtctgtct
cggctcgatctgagtgagaacttcatccaatccattccgagaaaagcgttcagaggagca
acggacatcaaaaacctgcaactggataaaaaccacatcagctgcattgaggatggagcc
ttcagagctctcaggggtctggaagtactgacactgaacaacaacaacattagcagcatc
cccgtctccagcttcaaccacatgcccaaactgcgaactttccgtcttcactccaacaac
ctaaactgtgattgtcatctggcctggctgtcacagtggctcagacagaggcctacgatc
ggtcttttcacccagtgtgcttcgcctgcagagctcagaggactaaatgtggcagaggtc
cagaaacatgagttcacctgctcagggcatcaggagtcttccagcccgcagccatgcagt
tctggtggaggatcctgccctgccatgtgcacctgcagtaacaacatagtggactgcagg
gggaaaggtctaactgctattccagccaatctgccagacagcatgtcagaaatacgtctg
gagcaaaatgggattaagtctgttcctcccggaaccttctctccctacaagaaactgcgc
aggatagacctgagcaataaccagatctcagagatagctcctgatgccttccagggcctg
cgctctctcaactcccttgtgctgtatggaaataagatcaccgacctgccaaagggtgtg
tttgatggcctctactctttgcaactgctgctgctgaatgccaataagattcattgcgtt
cgtgccaacgccttccaggatctgcaaaatctctccctactatcgctgtatgacaacaag
atccaaacccttgccaagggcaccttcacatcactacgagctatacaaaccctacacctg
gcccagaacccattcatttgtgactgtaatctgaagtggctggcagattacctgcgttcc
aaccctattgagaccagcggtgcccgttgtgccagccctcggcgcctcgctaacaaacgt
atcggacaaatcaagagcaagaaattccgctgctctgctaaagagcagtacgtcatccca
ggtacagaggacactcgtctcaacaatgcctgcaatacagaccctgtgtgtcctcccaag
tgtcgctgtgagtctaacgtagtggactgctccaacctgaaactcaccaagatcccagag
cacatccctgcatccacagctgaactccgcctaaacaataatgatatcaccactcttgag
gcaactggagtctttaagaacctttcccaactgaagaaaattaacctgagtaacaacaag
atcacagagatcgtggatggggcatttgaaggtgcatcctccgtcattgagcttcacctt
acagccaatcaaatcgattcagttcgcagcgggatgttccgaggcctcgagggactgcgc
atgctgatgttgaggaataacaaaatcagctgtgtccacaatgacagtttcactgggctt
cacaatgtccgtttactgtcgctgtatgacaaccatctgacctccattactcctggagcc
tttgacacgctgcagactctctctacgcttaacctcttggccaactctttcaactgtgac
tgtcgtttggcatggctgggtgactggctgaggagcagaaaaattgtgacaggtaaccct
cgctgccagcgtcctgccttcctaaaggagatccctctgcaggatgtagcaatgcctgat
tttcgctgtgaggaaggccaagaggagtcaagctgtgttcctcgaccccagtgtcccagc
gagtgtacttgccttgagactgtagtgcgctgcagtaacaagcatctccacacactacca
aaaggcatccccaggaatgtcacagaattgtaccttgatggaaaccagtttagtattgtt
cctaaggaactgtcttccttcaaatacctgcagctggtggatctgagcaacaacaaaatc
aacacgctttctaactcctccttcgctaacatgagccaactgaccactctaatcctgagc
tacaactccctgcgctgtatacccaaaatggctttcagtggactgcactccctgcgactg
ctctctctgcatggcaatgaaatctcagagcttccagatggcatctttaatgatgtgacc
tccctctcgcatttggcaattggtgccaatcctttgcactgtgactgccacctgcgctgg
ctctctgactgggtgaagaccggatacaaggaacccggaatcgctcgctgtgctggccca
caggggatggaaagcaaactgctccttactacgcctgccaagaaattcgaatgtacaggt
aatgtggacacctctgtgctggccaagtgtaacccgtgtctgtccagtccctgcctgaat
cacggcatctgtcacaatgacccagtggagatctacaggtgcaattgtccacctggattc
aagggcaagaattgtgagacagccctgaatgcctgtgtgagtaacccatgtgccaatgga
ggaacatgccaagtaaatgaagacgatgaaggagaataccgatgctcctgtctgctgggc
tttgagggcccgacctgccaaatcaatgtggacgactgtgaagacaatgactgcgagaac
ggagcaacctgtattgacggaatcaacaactacacttgtttttgtcccccctactacaca
ggggagatgtgtgaagaacttgaagatatgtgtgctccaggacgaagcccctgccaacat
cagtctacctgcctcatcagcacctctggacccaagtgtgtgtgttctcctggctatgtt
ggcgatgactgcagtataaactatgatgactgcagggagaatcgctgtcagaatggagca
cagtgtgtggatgagctgaatggatattcctgcatctgccctgaaggatatagcggtcag
ttgtgtgaagttcctccatctcgtctgtcgctatgtgagctggccgactgccaaaacaac
gccccctgtgtggagagaggtggccgtgccctctgccaatgtcctccagagttcggaggt
ccacgctgcgaaaaactggtcagcgtcaactttgtagatagagactcttatttactgcta
tctgacctggaaaactggccacaagctaacatcaccctgcaggtttccacagctgaagac
aatggtatcctgttgtataatggagacaatgatcacatcgcagtggagctcttccaaggt
catgtgaaagtgagttatgacccaggcagccaaccaggacatgctatatacagtaccgag
accatcaatgatggtcagttccacacagtggagctggtgacctttgaccagatggtgaac
ctgtccattgacgggggtcttcccaccacaatggacagctttggggctgtgcggcccctc
aacggagaggcgccactatacgtggggggtaggggccctctccagaacacacctccctcc
tctgcagggatgcctgtggatgtccactctggcactttccgtctctggcagatccagaac
ggttccagcttccatggctgcatacagaacctgtatatcaacaatgagctccaagacttc
acaaagacgcaaatgaagcctggtgtggtgccaggctgtgagccctgcaagaagctctac
tgtgtccatggcatctgccagcctgatgggttactgggaccagtgtgtcactgccagcct
gggtggagcggtgcacactgcgatcagcccgctctcaatccctgccagggcagcaaatgc
gtccatggaaagtgcattcctctggactcacaatcgtaccgctgtgagtgtgaagagggt
tatcgaggtgcactatgtaaccagcaaggagagcttttcaatccctgtcatcgcctatct
tgtaaacacggtcgctgccagatctctgactccggagaagcatactgtcactgcgaaagt
ggctacacaggggaactctgtgacgcagagtttgaatgtcgaggtgagccggtgagagac
ttctatcaggtacagcggggttatgccatttgtcaaacaacccgcatggtatcctgggtg
gagtgcaccggagcctgtgacacggggagctgctgcatcagccagagaatgaaacgccga
aaatacacctttgagtgcagcgacggaacatcttttactgaggaggtggaaaagaccatc
aagtgcggctgcgtgggttgcatgtag
DBGET
integrated database retrieval system
