Cyprinodon tularosa (White Sands pupfish): 119791644
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Entry
119791644 CDS
T07496
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ctul03036
]
119791644
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119791644
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
119791644
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
119791644
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_1st
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_5th
Ig_SMCHD1_2nd
HATPase_c_3
SMC_hinge
HATPase_c
AAA_23
Glyco_hydro2_C5
DUF3217
Motif
Other DBs
NCBI-GeneID:
119791644
NCBI-ProteinID:
XP_038153790
LinkDB
All DBs
Position
Unknown
AA seq
1957 aa
AA seq
DB search
MLQVNDCRFEKKVIKKTLETSNLDFNGFLQVVKKEFAVASHETFVLTTTDRIVVDDIKFD
KVKNERTLYLLREKDQDLPASVNEEVKFVPHYNTLTECGTNEYFTEGQKSLPCALAELVD
NALSATAKNTGLREIEIRVMFDRTFGKPAIIVLDNGCGMTSKQLNNWAVYRLSKFTRDNS
LFEGEREGYVFPDPVPRSLNSDISFFGVGGKRACFHMGNAVRMISKPVGSPDIHELVLSK
EEFQKKEQKKEDVYSDTILNRRPGDFSHITEEERFLRKIISEETGKNSFTVVVITGVSHD
HIKYLKEDFDEWTRELAHIYHYYIHGVNGNCKTDISQRSENLPRIDILVTLQASQSPRTI
NLRQVDDDMQTQYINAATDTFEFRAETMDHGIVEGVLRYHPFLYDRETYPRDPYVKQVPG
KDDYNDDDDERESTAINQARGKRDIFECFWNGRLIPYTTISDFDWCQRKRGSNLPPQCYN
CFSGVLFTDGKFMVNANKLKFMKLEKQLKTVDTIFTTGNLAQKTSKRAKIEKEFIRWLQN
CHEKFDKEVRFIGYKETVTRPELETQKKQYPWAVFSSIELDGKRYDTGKTLKFQKTPQIL
YGSVINFLLYGNHQEDVFATGGEVKIKREPEGLYDEMTKVIPITKIDRTATDESIKKHIE
SERKKLPEHLKVDWPEGNPLPKNAVLLAGTPLGPLKVEILNGDKAPISSRIHTGGKGPGI
KLGVLLQVELNGISENIKVFSITAPYSKNGYWFTKIENLRSLGKYTLTLNAVLNENGATV
YGGRELPSYVHDFTIKEGNAERFTVQLSSSQRVGVPFDINLKMEDCYGHPTKPPPQLQPE
LQCSDLNPRFETTARSENMITIKGVKVTGKLPHYLQTKNFDLKVILPGLKDDTKTVKLTL
SPGNPHSLHIESNTDSVENGNPVCFMIEVHDEAGNITAKSKQEVRFQIRGLPSVIKDCST
GKAELVSVPINREILNGEQQILQAKFDMPGQKQVKAITKEMVVMPSNRICRMVLFCKGEE
MLVLRNNENIDWQAGGVLENLFYKLYDEAAREVPITAEIASNIKVTWKRDIDQRDLLMGK
LPDLHVSTHVQEKHYYEVSYRDKNVSSCFKIVPCPDEPAQLKSTLTQSTLKLGETLSGHI
KLQLVDKYDNVCKKLTPMCAQLFSVEAEGLDKSEIKFKWNERGSSIGVMGIRFLSVSPGP
RVICFSYKHFTKQVILQVTPGMPFQLKLVSGPEQPLQVLNCQGIPTPFTVQLCDKWGNPS
PDKNLTVEMKPSPETLKLTHVKSQPMDSEGKVCFTINNLKGSKGSYILEFKGSLNGKSIP
GPSVKLILLPDPNKPVNLSVKYDTHARFPAGGTFPDFSVTVLSEEGSQMKTFKPEDLSMS
LWEKGSATQPETDIMPTCGKPIKDEENHCYRFRGEAIPKHAGEYTVEFALQSNKTEDQLR
TQINIKVVANEPIKLEPECQLETPVVFHCIDISNRILVENVTLKIMDQHGNPAGQDLNGK
VFISMKCPDGEIPRSLPLFKDKNSHVQISLKEGTANIDSLAISENSPGENGRRYILLFRP
EVTMPPTSLSPFELPFYFYNDAENQQKRCELMRRKDRMSEAIKETKKSLNLIREKKASLE
NEVKDTTEKEISFRNXLKHKGLKIEHQLSIEEIAEHLKQTKVEVENIEKSIRVCSIPNKF
SGPDILGMVGHLAFVADDDAARVISWHLQGDMDCVITTTTQAAQKLHQKPMGNQQVMPLD
SILVHQGSRLLPHIKHGRELFKPTGNPVFAKDLLIYLHKESCDPDKLTKVFKNLLGDTIL
MDDLNSATNYRKEVVEKRIFCPTILTRKGDRVSARGKFGGKNNRAPSIDQLKVFGAPLPP
HYFTLKDQIDALREYQALVEKKKEAEKELNDHKLTTFDEMLQKDTEREKIDKQLEEIEKE
LESVSVRPGKRASGSLEWPVILSKRPREKSTDSPERF
NT seq
5874 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaagtgaatgactgccgctttgaaaaaaaggtcatcaagaaaactttggaaacc
agtaatttggacttcaatggctttctgcaagttgtaaaaaaggaatttgctgtcgcttca
catgaaacttttgttttgaccacaactgacagaatagtagtggacgatataaaatttgac
aaggtgaagaacgagaggaccctctacctactacgagagaaagaccaagacctcccagct
tcagttaatgaggaggttaaatttgttcctcactacaacacactgactgagtgtgggaca
aatgaatacttcaccgagggccagaaatcactaccttgtgctcttgctgagttggtggac
aacgctctttcagctactgcaaaaaacactggactcagggagatagagataagggtgatg
tttgacagaacttttgggaaacctgcaataattgtcttagataatgggtgcggaatgacc
tcaaagcagctcaataactgggccgtgtacagactctctaagttcacgagggataacagc
ctgtttgaaggggaaagagaggggtatgttttccctgatcctgtacctcggagtctcaac
agtgacatatctttttttggagttggagggaaaagagcatgtttccacatgggcaatgct
gtcagaatgatcagcaaaccagttggctctccagatattcatgagctggttctgtcgaag
gaggaatttcagaaaaaggagcagaaaaaagaggatgtttacagtgacaccattctaaac
agaaggcctggtgacttctcacacataacagaggaagaacggttccttcgtaaaatcatc
agtgaagaaactggaaagaacagcttcactgtggttgtcataacaggagtttctcatgat
cacatcaaatacctgaaagaggactttgatgagtggaccagagagctagcccacatctat
cattattacattcatggagttaatggaaactgcaaaacagacatttcacaaagatcagag
aacttgccaagaattgacattcttgtaacattgcaggcttcccagagcccacgtacgatc
aatctcagacaagtggatgatgacatgcaaacacaatacataaatgcagccacagacaca
tttgagtttagggcggaaactatggatcatggcattgttgagggtgttcttagataccat
ccatttctctatgacagagagacctatcctagagatccatatgtcaaacaagttcctggt
aaggatgattataatgatgatgatgatgaaagggagtctaccgccataaatcaggcaagg
gggaagagggacatctttgaatgtttctggaatggacgtctcatcccctacacaacgatt
tctgattttgactggtgccaaaggaaaaggggatcaaacttacctccacagtgttacaat
tgcttttctggtgtgcttttcactgatggaaaatttatggtcaacgccaacaagttaaaa
ttcatgaaacttgagaagcagctgaaaactgtggatacaatttttaccactggaaatctt
gctcagaaaacctctaaaagagccaagattgaaaaagagtttatccggtggctccaaaac
tgtcatgaaaagtttgacaaagaggtgagatttattggctataaagaaactgtgacgcga
ccagaattggagactcagaaaaagcaatatccctgggcagtgttttcctccatcgaactt
gatggcaaaagatatgatacagggaaaactctaaagtttcagaagacaccacaaattctt
tatgggtctgtgataaattttctcttgtatggaaatcatcaagaagacgtgtttgccact
ggtggagaagtgaagatcaaacgtgagcctgaaggactctatgatgagatgaccaaggtt
atacccattactaaaattgacagaactgccactgatgaaagcatcaaaaaacacattgag
tctgaaaggaagaagctaccagaacacctaaaagtggactggccagagggtaatcctttg
cctaaaaatgctgttttgcttgctgggactcctttaggacctctcaaagttgaaattcta
aatggagacaaagccccaatctcatcaagaatacatacagggggcaaggggccagggata
aagctgggagttttgcttcaggtggagctcaatggtatatcagaaaacatcaaggttttt
agtatcaccgccccttattcaaaaaatggatactggttcacaaaaattgaaaacttgagg
agcttggggaagtacacactgactctaaatgctgtgttgaatgaaaatggtgccacggtc
tatggtggcagagagctgccaagctatgtacatgattttacaatcaaggaaggaaatgct
gagagatttactgtgcagttaagttcctctcagcgtgtaggggtgccttttgacattaat
ctaaagatggaggattgttatggccaccccacaaaacctcctcctcaactccaacctgaa
cttcagtgcagtgatctgaatccaaggtttgagacaacagctcgtagtgagaacatgata
actatcaaaggtgtgaaagtcacaggaaaactgcctcattatctacaaaccaagaatttt
gaccttaaagtgatactgcctgggcttaaggatgatacaaagactgtcaagcttaccctt
tcccctggaaatcctcattcacttcatattgaatcaaacaccgactcagtggagaatgga
aacccagtctgctttatgattgaagtccatgatgaagctggaaacatcacagctaaatct
aagcaagaagttcgcttccagattcgggggttgccatctgtgataaaagactgcagcaca
ggaaaagctgaacttgtctcagttcccattaaccgagaaatactcaatggagagcaacaa
atactccaagctaaatttgacatgcctggccagaagcaggttaaagcaatcactaaggag
atggtggtcatgcccagcaatcgtatctgtcgcatggtgcttttctgtaagggtgaggaa
atgctggtcttaaggaacaatgaaaatattgattggcaagctggaggagtactggagaac
ctgttttataagctgtatgatgaggctgcaagagaggtcccaatcacggctgaaattgcc
tccaatattaaggttacatggaaaagagatattgatcagagagatttgctaatgggaaag
ctaccagatctacatgttagcactcatgtgcaggaaaagcactactacgaggtctcctac
cgggacaagaacgtatcctcctgctttaaaattgtaccttgcccagatgaaccagcacaa
ctaaaatccactctgactcaaagcacattaaagcttggagaaaccttatctggacacatc
aagttgcagcttgtggacaagtatgataatgtatgcaagaagctcacccccatgtgtgct
cagttgttttctgtggaagctgagggtctggacaaatcagaaatcaaattcaaatggaac
gagcgcggcagctcaattggggtgatgggaattcgtttcctgtcagtgtctcctggtccc
agagtcatttgcttcagttacaaacacttcactaaacaggtcatcctccaagtaacacca
ggaatgcctttccaacttaaactggtcagcggtccggaacagccattgcaggtattgaat
tgtcaaggtattccaacaccatttactgtccagctatgtgataagtggggaaatccttct
ccggacaaaaacttaactgttgagatgaaaccttcacctgagacactaaagctgacacat
gttaagtcacaacccatggactcagaagggaaagtctgcttcactattaataatctgaaa
ggttcaaaagggtcctacatactggagtttaagggttccttaaatggcaaatccatccct
ggtccatcagtgaaactcattctactccctgatcccaacaaacctgtgaacctgtcagtg
aaatacgatacacatgccagattccctgctggaggcacatttccagatttttcagtgact
gtgctttctgaagaggggagtcagatgaagacttttaaacctgaagatctatctatgtcc
ctgtgggagaaagggtcggcaacacaacctgaaacagacattatgccaacatgcggaaaa
cctattaaagatgaggagaatcactgttatcgatttagaggagaagcaatcccaaaacat
gcaggggagtatactgtagagtttgctctacaaagcaacaaaacagaggatcagcttagg
actcagatcaatataaaggtggtggctaatgaaccaatcaaactggaacccgaatgccag
ctagaaaccccagttgttttccactgtatagacatcagcaatcgaatattggttgaaaat
gtgacgctaaagattatggatcagcatggtaatccagctgggcaggacttgaacggtaag
gtgttcatctcaatgaagtgtcctgacggagaaatacccagaagtctccccttgtttaaa
gacaaaaacagccacgtccaaattagcttaaaagaaggaactgccaatattgatagttta
gcaatttcagagaacagtcctggtgagaacggaagaagatatattctcctcttcaggcct
gaggtgacgatgccgcccacatctcttagtccttttgagctgcccttctatttttacaat
gatgctgagaaccagcaaaaaagatgtgaactgatgaggagaaaggatcggatgagtgaa
gctattaaagaaaccaagaaatcattaaatttaattcgtgaaaaaaaggcttcccttgaa
aatgaggtcaaagacacaacagagaaagagatttctttcagaaattagctgaaacacaaa
ggcctaaaaatagaacaccagttatcaattgaagaaattgcagaacatctaaaacagacg
aaagtagaggttgaaaacatagagaaaagtatcagagtttgttccattcctaacaaattc
agcgggccagatattcttggaatggttggccacttggcttttgttgctgatgatgatgct
gcaagggttatctcctggcacctgcagggagacatggactgcgtcatcaccaccacaaca
caagcagctcagaaactccaccaaaaaccaatgggcaaccagcaggtcatgcctctcgac
agcattcttgtgcaccagggaagccgactcctgccacacataaaacatggcagagaactt
tttaaacctactgggaacccagtctttgccaaggacctgctgatttatctccacaaagag
agttgtgatccagataaactgacaaaagtgtttaaaaacctcctcggcgacacgatcctg
atggatgacttgaactcagccactaactacaggaaagaggttgtggagaagaggatattt
tgtcctaccatactgacccgaaagggagacagggtcagtgccaggggcaaattcggaggg
aaaaacaacagagcaccatcaattgaccagttaaaagtgtttggagctcctctaccacca
cactacttcacactgaaagatcaaatagatgcgcttcgtgagtaccaagcactagtggag
aaaaaaaaagaagcagaaaaggagcttaatgaccacaagttaacaacgttcgatgaaatg
ctccaaaaagacacagagagagagaaaatcgataagcagctagaagagattgaaaaagaa
cttgaatctgtatcagtgagaccagggaaacgagcttctggaagcttggagtggcctgtg
atcctttcaaagcgtcccagagagaaatctacagacagcccagaaagattttag
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