Clostridium tyrobutyricum: CTK_C26110
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Entry
CTK_C26110 CDS
T04331
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ctyk
Clostridium tyrobutyricum
Pathway
ctyk03030
DNA replication
ctyk03410
Base excision repair
ctyk03420
Nucleotide excision repair
ctyk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctyk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CTK_C26110 (ligA)
03410 Base excision repair
CTK_C26110 (ligA)
03420 Nucleotide excision repair
CTK_C26110 (ligA)
03430 Mismatch repair
CTK_C26110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctyk03032
]
CTK_C26110 (ligA)
03400 DNA repair and recombination proteins [BR:
ctyk03400
]
CTK_C26110 (ligA)
Enzymes [BR:
ctyk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CTK_C26110 (ligA)
DNA replication proteins [BR:
ctyk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CTK_C26110 (ligA)
DNA repair and recombination proteins [BR:
ctyk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CTK_C26110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CTK_C26110 (ligA)
MMR (mismatch excision repair)
DNA ligase
CTK_C26110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CTK_C26110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
5_3_exonuc
Nlig-Ia
HHH
HHH_3
DNA_ligase_ZBD
BRCT_2
RNA_ligase
Zn_ribbon_PF0610
DUF669
RNA_pol_A_CTD
DUF7501
Zn_ribbon_3
Moricin
Motif
Other DBs
NCBI-ProteinID:
AND85855
LinkDB
All DBs
Position
complement(2587544..2589553)
Genome browser
AA seq
669 aa
AA seq
DB search
MNKDSNVSNKINEIIKELNKYAYDYYVLDNPAVSDKEYDKKYDQLVKLEKETGMVFPYSP
TQRVGDTVLTQFQKYVHKSKLWSMDKAQSLDQIYEWHKRNLKIVDLYNSTHEDKLPKLKY
ILTKKFDGLTVNCTYDQKGNFIKGATRGTGEIGEDVTEQIKTINSIPLKVNNKSLIEVHG
EAIMTKKAFEEYNKKADIPLKNLRNGAAGALRNLNVAETARRKLSAFFYDVGYNEGTPFE
NYTEMMKFIKDMGLPQDDYIKECETIDEIKEQLEYIESIRDELQYDIDGVVIVVDDIKTR
ELLGCTIKFPRWSIAYKFEAQEATTKLLDVEWNVGRSGRVTPTAILEPVELAGATIKRAT
LNNMDDIIRKGIKIGCRVFVRRSNDVIPEIMGAVEETLKDGKEIETPTRCPYCGSEIIQD
GVHYFCENTLSCKPQLVKSIVHFGSREAMNIEGFSEKTAVQLFEKLNIKSIPDLYRLNKE
QLMELDKFGEKKSQNLIDSIEKSKDCDLASFIYALGIPNVGKKTASDLVNVFMSLDNLKI
ATYEELVNIKDIGDTVANTIVEFFKQDNIIKSIEELLELGVKPYFEAKQIEKSIFNSKTV
VVTGLLKNYTRITIKQKLESLGAKVSESVSKKTDYVIAGESAGSKYDKAVKLGVDIIDED
QFENMFTNK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaaagatagtaatgtatccaataaaattaatgaaattataaaagaattaaataag
tacgcatatgattactatgtattggataatcctgctgtatctgataaagaatatgataaa
aaatatgatcaacttgtaaagttggaaaaagaaacaggaatggtatttccatattcacct
actcaaagagtaggtgatactgtattaactcaatttcaaaagtatgttcataaaagtaaa
ttgtggagtatggataaagcacaaagtttggatcaaatatatgaatggcataagagaaat
ttaaaaattgtagatttatataactctacccatgaggataaacttcctaaattaaaatat
attttaactaagaaatttgatggacttactgtaaattgtacttatgatcagaaaggaaac
tttataaagggtgccacaagaggaacgggtgaaataggagaagatgttacggaacaaatc
aaaactataaattcaattcctcttaaggtaaataataaaagcctgatagaagtccatgga
gaagctataatgaccaaaaaagcttttgaagagtacaataaaaaggcagatataccactt
aaaaatttaagaaatggagctgcaggtgctttaagaaatttaaatgtagcagagactgca
cgaagaaaattgtctgcatttttttatgatgtaggatataacgaaggtacgccttttgaa
aattacactgaaatgatgaaatttataaaagatatgggattacctcaagatgattatata
aaagaatgtgaaactatagatgaaattaaagaacaacttgagtacatagaaagtataaga
gatgaacttcaatatgatatagatggagttgttattgtagttgatgatataaaaacaaga
gaattattaggatgtactatcaagtttccaagatggtcaatagcatataaatttgaggcc
caggaggctactacaaaacttttagatgtggaatggaatgttggtagaagcggaagagtt
actccaacggctatacttgagcctgttgaacttgcaggagctacaattaaaagagctaca
ttaaataacatggatgatataatcagaaaaggaattaaaataggatgcagagtttttgta
agacgttcaaatgatgtcataccagagattatgggagcagtagaagaaaccctaaaagat
ggaaaagaaattgaaactccaacaaggtgcccgtattgtggaagtgagattatacaggat
ggagttcattatttttgtgagaatactctttcctgcaaaccccagttagttaagagtatt
gtacattttggaagtagggaagccatgaatatagagggattcagcgaaaaaacagctgtt
cagttatttgaaaaattaaacataaaatcaatacctgatctatatagattaaataaggaa
caacttatggaacttgacaaattcggagaaaagaaatctcaaaatcttatagattccata
gaaaagagcaaagattgtgatctggcttcatttatatatgctttaggaataccaaatgta
gggaagaagaccgcatctgatctcgtaaatgtttttatgagtttggataatttgaaaata
gcaacttatgaagaacttgtaaatattaaggatataggagatacagttgcaaatacaatt
gtagaatttttcaaacaggataatataataaaaagtatagaggaactattggaattaggt
gttaaaccttattttgaagcaaagcaaattgagaaaagcatttttaatagcaaaactgta
gtagtaacgggattactaaaaaattatacaaggataactataaagcagaaattggagagt
ttgggagccaaggtatctgaaagtgtaagcaagaaaacagattatgtaatagctggcgaa
tctgcaggttccaaatatgataaagccgttaaacttggagttgatataatagatgaagac
caatttgaaaatatgtttacaaacaaataa
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integrated database retrieval system
