Cuculus canorus (common cuckoo): 104056322 Help Entry 104056322         CDS       T08597                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism cuca  Cuculus canorus (common cuckoo) Pathway cuca04010   MAPK signaling pathway cuca04120   Ubiquitin mediated proteolysis cuca04140   Autophagy - animal cuca04144   Endocytosis cuca04517   IgSF CAM signaling cuca04620   Toll-like receptor signaling pathway cuca04621   NOD-like receptor signaling pathway cuca04622   RIG-I-like receptor signaling pathway cuca05132   Salmonella infection cuca05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:cuca00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     104056322 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     104056322 (TRAF6)   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     104056322 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     104056322 (TRAF6)    04140 Autophagy - animal     104056322 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     104056322 (TRAF6)    04621 NOD-like receptor signaling pathway     104056322 (TRAF6)    04622 RIG-I-like receptor signaling pathway     104056322 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     104056322 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     104056322 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cuca04131]     104056322 (TRAF6)    04121 Ubiquitin system [BR:cuca04121]     104056322 (TRAF6) Enzymes [BR:cuca01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      104056322 (TRAF6) Membrane trafficking [BR:cuca04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     104056322 (TRAF6) Ubiquitin system [BR:cuca04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     104056322 (TRAF6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 PspA_IM30 zf-RING_5 SlyX CCDC18_1st Sina_ZnF Med21 RING_XB3-XBAT31 TRAF3_RING zf-RING_11 Spc29 DUF4455 CENP-F_leu_zip HMMR_N PUMA_CC ATG16 CCDC39 HAP1_N U-box TMF_TATA_bd DUF16 CEP104_ZnF HAUS1 RNase_Y_N DUF1664 DUF7607 DUF7310 ZapB_rel TMF_DNA_bd AAA_13 Mua ADIP DUF8221 TMEM120A-B DM Motif Other DBs NCBI-GeneID:  104056322 NCBI-ProteinID:  XP_053923767 LinkDB All DBs Position 5:complement(46341156..46363343) Genome browser AA seq 545 aa AA seqDB search MSLLYSGNSCGAQDAESGCCAAMASACSAGAKEDSVTVSSGTGNPPSSFTEETQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD NFAKREILSLIVKCPNKGCSLKMELRHLEDHQLQCDFSTVECPQCQGAFQKNHLKEHMMQ ECPRRQVCCPNCATAMAYEDRELHDQTCPLANVFCEYCNTVFIREQMPNHYNNDCPTAPV PCFYSAFGCPEKMQRKELARHMQEFTQVHMRMMAQSFQNISVTATNPVPFISGLPFDPAL FSHVSHTAYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHVAELKRTIRNL EEKITEMEAQQSNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQL PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL AFQRPTIHRNPKGFGYVTFMHLQTLKQRTFIKDDTLLVRCEVLTRLDLNSLRREGFQARS TDGAM NT seq 1638 nt NT seq  +upstreamnt  +downstreamnt atgagcttactatatagtggtaacagttgtggagcccaagacgcagaaagtggctgctgt gcagctatggccagtgcctgcagtgctggagcaaaagaagacagtgtaactgtcagcagt gggactggaaaccctccaagttctttcacagaggaaacacaaggatatgatgtggagttt gatccgcccttggaaagtaaatatgaatgtccaatctgtttgatggctcttcgggaggca gtgcagacaccatgtggacaccgtttctgcaaaggctgcattgtcaaatcaataagagat gcaggtcacaagtgtccagtagacaacgaaattctgctcgaaaatcagctttttcctgac aactttgctaaacgagaaatcctttcattaatagttaagtgtcccaacaagggctgcagt ttgaagatggagctgagacatttagaggaccaccagttgcagtgtgatttttccactgtg gaatgcccacagtgccaaggagccttccagaagaaccatctgaaagagcatatgatgcag gagtgtccaaggcgtcaagtctgctgtccaaactgtgccacagctatggcctatgaagat agagagcttcatgaccaaacctgcccactcgccaatgtattttgtgaatattgcaacacg gtgttcattagagagcagatgcctaaccactataacaatgattgtcctactgccccagtg ccatgtttttacagtgccttcggatgtcctgaaaagatgcaaaggaaggaactggcacga catatgcaagagttcactcaggttcacatgagaatgatggctcagagttttcagaatatc agtgttactgctacaaatcctgtacccttcatcagtggcctaccctttgatcctgccctc ttctcacacgtctcacatactgcatatgattgtaatccagaagttgaaaacttcaaagaa actattcagcaattggaaggtcgtctggtaagacaagatcaccaaatcagagaactcatc gctaaaatggagactcagaacactcatgttgcagaactcaaacgtactatccgaaattta gaggaaaagattactgaaatggaagcgcagcaatctaacggtatttatatctggaagatt gagaacttcagtggacttcagaaagcccaggaagaagagagacctgttgtgatgcacagt cctggcttctatactggaaagcctggctacaagctgtgcttgcgtctgcatatccaattg ccaaatgctcagcgttgtgctaatttcatatctctgtttgtccacactatgcaaggagaa tatgacagccatctgccctggcccttccaaggcactatacgactttctattttggatcag tcagaaggccctgaaaggcagaatcatgaagaagtaatggaagccaagccagaattacta gccttccagagaccaacaattcaccgcaatccaaaaggttttggttatgtgactttcatg catctgcaaaccttgaaacaaaggaccttcataaaggatgatacccttctggtgcgctgt gaagttctaacacgtctagatttaaacagtctccgcagagaaggatttcaagctcgcagc actgatggagctatgtag

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