Cuculus canorus (common cuckoo): 104057541
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Entry
104057541 CDS
T08597
Symbol
PTPRF
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04514
Cell adhesion molecules
cuca04520
Adherens junction
cuca04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
104057541 (PTPRF)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
104057541 (PTPRF)
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
104057541 (PTPRF)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cuca01009
]
104057541 (PTPRF)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cuca04515
]
104057541 (PTPRF)
Enzymes [BR:
cuca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
104057541 (PTPRF)
Protein phosphatases and associated proteins [BR:
cuca01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
104057541 (PTPRF)
Cell adhesion molecules [BR:
cuca04515
]
Immunoglobulin superfamily
Type II RPTP family
104057541 (PTPRF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
ig
fn3_2
Interfer-bind
PTP-SAK
Tc-R-P
V-set
DSPc
C2-set_2
Y_phosphatase3
PTPlike_phytase
PTP-NADK
Ig_C17orf99
Fn3_PTPRU
Insulin_TMD
DUF3377
ICAM_N
TMEM154
Motif
Other DBs
NCBI-GeneID:
104057541
NCBI-ProteinID:
XP_053928518
LinkDB
All DBs
Position
8:complement(28201669..28606897)
Genome browser
AA seq
1918 aa
AA seq
DB search
MVPNFCVPVLTVPAAILCCLMLPLAGADSKPTFMKAPEDQIGISGGVASFVCQATGEPKP
RITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRVHRDEAIYECTATNSVGEINTSAKL
TVLEEDHLPAGFPTIDMGPQLKVVEKARTATMLCAASGNPDPEISWFKDFLPVDTATSNG
RIKQLRSGGTPIRGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSI
PPSNHEVMPGGSVNLTCVAVGAPMPYVKWMAGVEELTKEDEMPVGRNVLELNNIMQSANY
TCVAISSLGMIEATAQITVKALPKPPTEPLVTETTATSVTLTWDSGNSDPISYYVIQYKP
KSLDGQFQEVDGVATTRYSIGGLSPFSEYEFRVIAVNNIGRGPPSELVEARTGEQAPSSP
PLKVQARMLSASTMLVQWEQPEEPNGQIRGYRVYYTTDPHLPLSMWQKHNTDDSHLTTVG
SLITGTTYSIRVLAFTSVGDGPPSDIIQVKTQQGVPAQPADFQAEAESDTRILLTWLPAS
QERITKYELLYWEGEDGTQQKVEFDPTSSYAVEGLKPDTLYKFRLGARSELGVGVYTPMI
EARTAQSTPSAPPQEVECISTSSTTIRVSWVPPPAQSRNGVITQYSIAYQAVEGDDNTKH
VVDGIGREHSSWEIKDLEKWTEYKVWVRAHTDVGPGPESIPVHVRTDEDVPSAPPRKVEV
ESVNSTAIRVSWKLPISNKQHGQIRGYQVTYVKLENNEPRGQPVIKDVMLSEAQWRTEDS
VDHETIIGGLLPETTYSVTVAAYTTKGDGARSKPKVITTTGAVPGKPTMMISTTAMNTAL
IQWHPPKEMVGELLGYRLQYRRLDEEKMNTIDFGKRDHHYTVTNLHKGATYLFKLSAKNR
AGPGEEFEKEITTAEDVPSGFPQNLRVVGLTTSTTEVAWEPPVLAERNGKIVNYTVVYRD
INSQQDLVNITKDTSITLTNLKPDTTYDIKVRARTNKGVGPLSPSIQSRTMPVEQVFAKN
FRVNAVMKTSVLLSWEVPDSYKSTVPFKILYNSQSVEVDGHSMKKLISDLQPDTDYSFVL
MNRGSSAGGLQHLVSIRTAPDVLQSKPIATNKYIQEGKFTLTLPKVQTTVPVRWYYIVVV
PADHSASSPTARWRTPDEMELDQLLEAISQGSQSRRQRRQADRLKPYIAAQVDVLPETFT
LGDEKNYKGFYNKPLSQDLSYRCFVLASLEDGDTKRYAASPYSDEIVMEVASAKQQDEPE
MLWVMGPVLAVILIIIIVIAILLFKRKRAHSPSSKDEHSIGLKDSLLAHSSDPVEMRRLN
YQTPGASVPSCPNISSMRDHPPIPVTDLADNIDRLKANDGLKFSQEYESIDPGQQFTWEN
SNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLPE
TLSDFWRMVWEQRTATIVMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTLLETVELATYT
VRSFVLYKNGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPSDAGPMVVHCS
AGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALLEAAT
CGNTEVHARNLFAHIQKLTQVPPGESVTAMELEFKLLANSKAHTSRFISANLPCNKFKNR
LVNIMPYELTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWE
HNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILREFKVTDARD
GQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITVHCSAGVGRTGVF
ITLSIVLERMRYEGRVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDHYAT
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctaacttctgtgtcccagtactcactgtgccagcagccatcctttgctgcttg
atgctgcctttagcaggagcggacagcaagccaacatttatgaaagctcctgaagatcag
attgggatttctggaggagtggcctcttttgtgtgtcaggcaacaggagagcccaaacct
cgtatcacatggatgaagaaggggaagaaagtcagttctcagcggtttgaggttatcgag
tttgatgatggatcgggatcagttctgcggatacagcccctgcgtgttcatcgagatgaa
gctatctatgagtgcacagcaaccaatagtgttggggaaataaacacgagtgccaaatta
acagtgttagaagaagaccatctcccagccggcttcccaaccattgacatgggcccacag
ctgaaggtggtggaaaaagcccgcacagccacgatgctctgtgctgcaagtggtaaccct
gatcctgaaatctcctggttcaaggacttcctgcctgttgacactgcgactagcaatggg
cgaatcaagcagctccgctcgggtggtacaccgatcagaggagctctgcaaatagagaac
agcgaggagtcagaccaaggcaaatatgaatgtgttgcaaccaacagcgcaggaacccgc
tactctgccccagctaacctttatgttcgagtgcggcgtgttgctcctcgattctctatc
cctccgagcaaccacgaggtgatgcctggggggagcgtgaacctcacgtgcgtggcagta
ggcgctccaatgccctacgtgaagtggatggctggtgtggaggaactgaccaaagaagat
gagatgcccgtcggtaggaacgtcctggagcttaataacatcatgcagtctgccaactac
acctgcgtagccatctcatcgcttggcatgatcgaagctacagcccagatcactgtcaaa
gcactgccaaaacctccaacagagccattagtgactgaaacgacagctaccagcgtgacc
ctcacctgggattcaggcaactctgaccccatttcatattacgtcatccagtacaagccc
aaatccttggatggtcagttccaggaggtagatggcgtggcaacaacgcgttatagcata
ggtgggctcagccccttttcagagtacgagttccgggtcatcgcagtcaataacattggc
aggggtccccccagtgagctggtcgaggcccggacaggagaacaagctccttcaagtcca
cccctgaaagtccaagcaaggatgctgagcgccagcaccatgctggtccagtgggagcag
ccagaagaacctaacggacagatccgaggataccgcgtttactataccaccgacccacac
ctgcctttgagcatgtggcagaaacacaacaccgatgacagccacctcaccactgtgggg
agccttatcacagggaccacatacagcatccgtgtcctggcctttacttcggtgggcgat
ggtcccccctcggacatcatccaggtcaaaacgcagcaaggggttcccgcccagccagct
gacttccaggcagaagcagagtctgatacccgcatcctgttgacgtggctgcccgcctct
caggaacgcatcaccaaatatgagctgctgtactgggaaggggaggatggcactcagcaa
aaggtggagtttgatccaacctcctcgtatgctgtggaaggtctcaaaccagacacgctg
tataagttccgtctgggtgcccgctcagagctgggagttggagtctacactcccatgatc
gaagccagaactgcccaatccaccccctccgccccaccccaagaagtcgagtgtataagc
accagctccactaccatccgggtaagttgggtgccaccgcctgcccagagccgcaatggg
gtcatcacccagtactccattgcgtaccaggcagtggaaggagatgacaacaccaagcat
gtggtggatggcattggacgggagcactccagctgggagatcaaggacctggagaaatgg
accgagtacaaggtgtgggtgagggctcacaccgatgtggggccaggaccggagagcatc
cctgtgcatgtgcgcactgacgaggatgtgcccagtgccccaccgcgaaaggtggaggta
gagtccgtgaattcaactgccatccgggtgagctggaagctgcccatctccaacaagcag
cacgggcagattcgtgggtaccaggttacgtatgtgaagctggaaaacaatgagcctcga
gggcagccagtgatcaaggacgtcatgctgtcagaagcacagtggagaactgaggactcc
gtcgaccatgagacgatcattggaggcctgctgccagaaaccacctactccgtcacagtt
gctgcctacaccaccaaaggagatggtgcccgcagcaagccgaaggtcatcaccaccaca
ggggcagtcccggggaagcccaccatgatgattagcacgacagccatgaacacagccctc
atccagtggcacccacccaaggagatggtaggggagctgctgggttaccggctgcagtac
agacgtcttgatgaggagaagatgaacacgatagacttcgggaagagagaccatcactac
actgtgaccaacctgcacaagggggctacatacctcttcaaattgtctgccaagaacaga
gctggcccaggagaggagtttgagaaggagatcactactgcggaagatgtgccaagcggg
ttcccacagaacctgcgtgtggtgggtctcactacttccaccacagaggttgcatgggaa
cccccggtcttggcagaaagaaacggcaagatagtcaactacacagtggtatacagggac
ataaatagccagcaggacctggttaacatcaccaaggacacaagtatcactttgacgaat
ttgaagcccgataccacttacgacatcaaagtgagggcacgcaccaataagggggttggg
ccactcagccccagcatccagtcccggaccatgcctgttgagcaagtgtttgctaagaac
ttccgcgtcaatgctgtcatgaaaacatctgtgttgctgagctgggaagtgcctgactcc
tataaatctacagtgccttttaagattctgtacaatagccagagtgtggaggtggatggc
cactcgatgaagaaactcataagtgacctccagccggacacggactattcttttgtgcta
atgaatcgcgggagcagtgccgggggactccagcaccttgtctcaatccgcaccgctcct
gacgtcctgcaaagcaaacccatcgccacaaacaagtacatacaggaaggaaaattcaca
ctcactcttcccaaagtccagaccactgtgccagttaggtggtactacatcgtggttgtg
ccagcagatcacagtgccagcagcccgactgctcggtggcggacgccggatgagatggag
ctggaccagctgctggaggccataagccaagggagtcagagcaggcgccagcgacgccaa
gcagacagactcaagccctacatcgctgctcaagtggatgtgctgcctgagaccttcacc
ctaggggatgagaagaactacaaagggttctacaacaaacccctgtctcaagacctgagc
tatcgatgcttcgtgctggcctccctggaggatggagacacgaagaggtatgcagccagc
ccttactcggatgagatcgtgatggaagtggcttcagcaaagcagcaggatgaaccggag
atgctgtgggtgatgggacccgtgctggctgtgatattaatcatcatcattgtcattgct
atactcctcttcaaaaggaaaagggcacactccccctcttccaaggatgagcactccatc
ggcctgaaggactcgctcttggcccactcctctgacccagttgagatgaggcggctcaac
taccagactccaggtgccagtgtccccagttgcccgaatatctcaagcatgcgcgaccac
cctcccatccctgtgaccgacctcgccgacaacattgacaggttgaaagccaacgacgga
ctgaagttctcccaggagtatgagtccattgatcccgggcagcagttcacctgggagaac
tccaacctggaggtgaacaaaccgaaaaaccgctatgcaaacgtgatcgcctacgaccac
tcacgcgtcatcctgacctccattgatggtgtaccaggcagcgattacatcaatgccaat
tacattgatgggtatcgaaagcagaatgcctacatcgccacgcagggacccctgccagaa
accctcagcgacttctggaggatggtgtgggagcagagaacagcaactatagtcatgatg
accaggctggaagagaagtccagggtaaaatgtgaccagtactggccaagccggggtaca
gaaacctatgggatgatccaagtgaccctgctggaaacagttgagctggcaacctacact
gtccgcagctttgtattgtacaagaacggctccagtgagaagcgagagctgcgacagttc
cagttcatggcttggcctgatcacggagtaccagaatacccaactccgatcctagctttc
ctacgacgggtcaaggcctgtaacccatcggatgctgggcccatggttgtccactgcagt
gctggcgtcggccgaactggttgcttcattgtcattgacgccatgttggagcggatgaag
catgagaagaccgtggacatctatggccacgtgacgtgcatgcgctctcagcgcaactac
atggtgcagacagaggaccagtacatcttcatccacgaggccttgctggaagcagccaca
tgtggcaataccgaggtgcacgcacgcaacctctttgctcacatccagaagctgacccag
gtgccacccggcgagagcgttactgcaatggagctggaattcaagctgctggccaactct
aaagcacatacctcacgtttcatcagtgccaacctcccatgcaacaaattcaagaaccgc
ctcgtgaacatcatgccatacgagctgacaagagtctgtctgcagcccatccggggtgtc
gagggctccgattacatcaacgccagcttcatagatgggtacaggcagcagaaggcctac
atcgctacacagggaccgctggctgagaccacagaggatttctggcggatgctctgggag
cacaactccaccatcgtggtgatgttgaccaagcttcgcgagatgggccgggagaagtgc
catcagtactggcctgcagagcgctctgcccgataccagtacttcgtggtggaccccatg
gcagagtacaacatgccgcagtacatcctccgggagttcaaggtgacggatgccagggac
ggccagtcacggaccatccgccagttccagttcacagactggcctgagcagggagtgcca
aagacgggagagggcttcattgacttcatcgggcaggtgcacaagaccaaggagcagttt
ggacaggatgggcccatcacagtgcactgcagcgccggagtcgggcgcacaggcgtgttc
atcacgctcagcatcgtgctggagaggatgcgctacgaggggagggtggacatgttccag
acagtgaagaccttgcggacacagcggccagccatggtgcagacagaggaccagtaccag
ctgtgctacagagcggcactggagtatcttggcagctttgatcactatgcaacgtaa
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integrated database retrieval system
