Cuculus canorus (common cuckoo): 104058827
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Entry
104058827 CDS
T08597
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X9
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104058827 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cuca03000
]
104058827 (KDM2B)
04121 Ubiquitin system [BR:
cuca04121
]
104058827 (KDM2B)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104058827 (KDM2B)
Enzymes [BR:
cuca01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104058827 (KDM2B)
Transcription factors [BR:
cuca03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104058827 (KDM2B)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104058827 (KDM2B)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104058827 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104058827 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
104058827
NCBI-ProteinID:
XP_009558703
LinkDB
All DBs
Position
17:10491380..10613860
Genome browser
AA seq
1265 aa
AA seq
DB search
MKLSKKMEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKTYRGDFVH
AMDGKDFTFEYVQREALRVPLVFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKERQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHIQEEKDDSLDKNSKSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSIKSTTPADYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGTASTVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KINRDNKEVTDAAKRKGDCEETPRRKSEEHSKKAPVDSILRRKSDEVHLWRKRKFEKPQE
PTMRKRLKLGKEDKLFRKKRRSWKAPDDRTGVIKPLRRLKQEPEDELPEAPPRSKDSDQS
RSSSPTAGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQ
PIKSEPESENEEPKRALNNNERLHRFSKGLNGTPRELRHQLIPSLRSTPRGITRPPPSLS
PPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKT
WNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGL
RDLLLSGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSK
LRNIVELRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLT
EINLSDCNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKL
LQKLS
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcagagaaagactctggaagaagattgcgatccatt
ggcaggaggcgatacgatgagaacgaggacctctcggacgtggaggaaatcgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaacttatcgcggggatttcgtccat
gccatggacgggaaagattttacctttgagtatgtgcaaagagaagccctcagagtcccc
cttgtcttcagaaataaggacggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgacggatagtggatgtgatggatgtgaacacg
cagaggggagttgaaatgagcatgtctcagtttgtgagatactacgaaacaccagaggcc
cagcgggaaaaactctacaatgtcatcagcctggagttcagccacacgaagctggagaac
attgtcaagcgccccaatgtggtggacttggtcgactgggtggataatatgtggccacag
catttgaaggagaggcagacggatgctaccaatgctatttcggagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcacggattttcatattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctgattccg
cctactctgcagaatctagaactttatgaagaatgggttctctcgggaaagcaaagtgat
atctttctgggagacagggtggaacgatgccaaagaattgagctgaaacaaggctatacg
ttcttcattccatcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaacatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgag
gacagaacaagggtgcacgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcaaagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagatagctactcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatattcaggaggagaaggatgac
agcttggataagaactccaaatccttggtggatggctcctcctcacccaacagcacacac
tcggaagggaaggaaggtgcaggaagaaaacaaaaagccacagtaatgagatacctaaaa
agaactttgtctaatgagtcagatgacagcataaaatcaacgacccctgcggactatcca
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagatccgcaggctcttctagaggacatgaagaacatc
ctgaaggaacatgctgatgatgaccaaaatctcgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagttggacggcccaaagggaaactgggcact
gcttccacggtcaagctcgcagctaatcggacaaccgctggagcacgccggagaaggacg
cgatgccgcaagtgcgaagcgtgtctgcggacagagtgcggcgagtgtcacttctgcaaa
gacatgaagaaatttgggggacctggcaggatgaagcagtcctgcattatgaggcagtgt
atcgcaccggtgttgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgctccatttgt
aatgaaatcatacacccaggatgccttaaggtgaaggaatcagatggtgtggttaacgac
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaacaa
aagcgcggaccaggattcaaatacgcatcaaatctcccaggctcgttgctgaaggagcag
aaaattaacagagacaataaggaagtaacagatgctgcgaaacggaaaggggattgtgaa
gaaactcctaggcggaaatcggaggaacattccaaaaaggctccagttgactccatactg
aggagaaagtcagacgaagtgcatctgtggaggaaaaggaaatttgagaaaccccaggaa
cccactatgagaaagcggctaaaacttggaaaagaagacaaactcttcaggaagaagcgg
cgatcgtggaaggctccagatgaccgaactggcgtgatcaaacccctgcggcgcttgaag
caggagccggaggatgaactgccagaagcacctcccaggtccaaggatagtgaccagtct
cggtccagctcgcccactgccggtcctagcactgagggtgctgagcccagggacaagaag
aagttcaagatgaggcggaaaaggcggcttcccaataaggaactgagcaaggagctcagc
aaggagcttaaccaggagatccaaaaaaccgagaacagccttgccaatgagaatcaccaa
cccatcaaatctgaacctgagagcgagaacgaggaacctaagcgtgctttgaacaacaac
gagagactccataggttcagcaaaggtttaaatgggactccccgggagctgaggcaccag
ctcatccccagcctgcgaagcacacctcggggaatcacccggccaccgccttcgctctct
cctcccaaatgcattcagatggaacggcacgttatccggccacctcccatcagcccccct
ccggactcactccccctggatgacggggcagcccacgtgatgcagagggaagtctggatg
gctgtctttagctacctcagtcatagagacttgtgcatctgtatgagagtttgcaagacc
tggaacagatggtgctgtgacaaaagattatggaccaaaatagatttaaaccattgtaaa
tccatcactccacttatgcttagtggcattattaggagacagcctgtaacccttgatctt
agctggacaaatatatccaaaaagcagctgagttggcttatcaaccgactgccaggtctt
cgagacctgctgttatcagggtgctcatggatagcagtgtcggcactttgtagttccagt
tgtcccttactccgaactctggacgtgcagtgggcagaaggactgaaagacgcacaaatg
agagacctcttgtcaccacccacagataaccggccaggtcagatcgacaaccggagtaag
ctacggaacatagttgagctgcgtttagccggcctggatatcacagacgcttcgttgagg
ctgatcataaggcacatgccgctgctctccaaactcaatctcagttactgtaaccatgtg
acggatcagtctattaacctgctgaccgcggttggaaccaccacgcgggattcattaaca
gaaattaatttatcagactgcaataaggttactgaccagtgcctgtcctacttcaaacgt
tgtggaaacatctgccagatcgaccttaggtactgcaagcaagtgacaaaggaaggctgc
gagcagttcatcgcggagatgtccgtaagtgttcagttcgggcaagtggaggagaaactt
ctgcaaaaactgagttag
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