Cuculus canorus (common cuckoo): 104062976
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Entry
104062976 CDS
T08597
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104062976 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104062976 (LIG4)
Enzymes [BR:
cuca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104062976 (LIG4)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104062976 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
C8-3_MUC4
Tox-REase-9
SKA1
Motif
Other DBs
NCBI-GeneID:
104062976
NCBI-ProteinID:
XP_053934259
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All DBs
Position
1:46384994..46390183
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AA seq
919 aa
AA seq
DB search
MRSENQSLMASTPASQSSKKTVASRVPFADLCSTLERIQTCKSRPEKIKYFKEFLDSWRK
FHDALHQKEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDASK
LLNYRTPAGTRGDAGDFAMVAYFVLKPRSPKQGRLTIEQVNEHLDVIANNNAAKNKGLLK
KSLLQLITQSTALEQKWLIRMIIKDLKLGVSERTIFSVFHPDAAELHNVTTDLEKVCRQL
HDPSVSLSDVSIMLFSAFKPMLAAIADVKQIEKQMNNQVFYIETKLDGERMQMHKDGDVY
KYFSRNGFDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNK
FDIKRMVEDSDLQTCFCVFDVLMVNNQKLGQETLSKRYEILSSVFSPVTGRLHVVPKKNA
RMRKEVIDALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVG
GYWGKGSRGGMMSHFLCAVAEKPCPNEKPTVFHSICRVGSGYTMKELYDLGLKLSKHWKP
YDRKDPPSNILCGTEKPEMYIEPCNSVIVQVKAAEIVNSDMYKTDCTLRFPRIEKIREDK
EWYECMTLDILEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKVIGIAEQFKAPD
LSNVSKVSNIFEDVEFCVMTGMGKYSKSELESRIAEYGGSVVQNPGPETYCVIVGAENVR
VKNIIASNKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTAE
TDVAQLKEVFSRMKDNKVMPLDVIAVLEERYSWNSCPLSIFRGNTVYVDCYAIVNDPRTK
IHGTILSIRALELRFYGAKVVLCLEEGVSHVVIGEDHSRVKEMKALRRTFGKKFKIVSEL
WVTVSVEEGVLKNENQYLI
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagtgaaaaccagagtctgatggcttccacacctgcttcacaatcttctaaaaaa
acggtggcttctcgcgtgccttttgcagatctgtgttctactctggagcggatacagacg
tgtaaatctcgtccagagaaaatcaagtatttcaaggaatttctagattcctggagaaaa
ttccatgatgctcttcatcagaaagagaaagacgtcacagattctttttacccagccatg
cggcttattcttccacagttggaaagagaaaggatggcctatgggattaaagaaactatg
cttgcaaagctgtatattgaactgcttaatttaccaaaagatggaaaagatgcttcaaag
cttttaaattacaggacacctgctggcacacgtggagatgctggagactttgcaatggtt
gcatacttcgtgttaaaacctaggagcccaaaacaaggcagactgacgatagaacaagtc
aatgaacatttagatgtgatagctaataataatgctgctaaaaacaagggtctgttaaag
aaaagtcttctccagttaattacccagagcacagcactggaacaaaaatggcttatccgg
atgattataaaggatctaaagcttggtgttagcgaacgcactatattttcagtttttcat
cctgatgctgctgaattgcacaatgtcacaactgatttggaaaaagtttgcagacagctg
catgatccctctgtctcactgagtgatgtttctatcatgttgttttctgcctttaaacca
atgcttgctgctattgctgatgtcaagcaaattgagaaacaaatgaataaccaggtattc
tacatagaaactaagttggatggtgagcgtatgcagatgcacaaagatggagatgtgtat
aagtatttttcccggaatggctttgactatactcagcagtttggtgcttcccctcttgat
ggttcattaacaccatttattcataatgtgtttaagagcaatatacaaaattgcattctt
gatggtgaaatgatggcttacaatcctgagacacaaacctttatgcagaaagggaacaaa
tttgacataaaaagaatggtggaggactctgatctgcagacctgcttttgtgtgtttgat
gttttgatggttaacaatcagaagttgggtcaggaaacactaagcaaaaggtatgaaatc
ttaagtagcgtattttccccggtaacaggcaggttacatgttgtaccaaaaaaaaatgct
agaatgagaaaagaagtaattgatgctttaaatgaagcaatagataacagagaggaaggg
attatggtgaaagatcccatgtccacctacaagcctgacaaacgtggggaaggctggtta
aaaatcaagccagaatacgtcaatggattgatggatgaactagaccttttaattgttggt
ggctactgggggaagggctcacgtggtggaatgatgtctcattttctgtgtgctgttgca
gagaaaccctgtccaaatgagaaacctactgttttccactctatttgtcgggttggctct
ggctatactatgaaggaattgtatgatctaggcttgaaactgtctaaacattggaagccc
tatgataggaaggaccctccctctaacattttgtgtggaactgaaaaacctgaaatgtac
attgaaccttgcaactctgtcatagttcaggtcaaggcagctgagattgttaacagtgac
atgtacaaaactgactgtactttgagattcccccgaattgagaagataagagaggacaaa
gaatggtatgagtgcatgactttagatatattagaagatctcagaagcaaagcagaaggg
aagctggcatcaaagcatcttcatatagatgagtatgatgagccacaagagaaaaaaaga
aagaccgtgtcaaaggtgaagaaggtaattggaatagctgagcaatttaaagctcctgat
ctttctaatgtaagcaaggtttcaaatatatttgaagatgtggagttttgtgttatgaca
ggaatgggaaagtactcaaagtcagaactagaaagcagaatagctgaatatggtggcagt
gtggtacagaatccagggccagagacatactgtgtcattgtaggagctgagaatgtgaga
gtgaaaaacatcattgcttccaacaaatacgatgtggttagggcagagtggcttcttcag
tgttttcagactaaaatgctggtgccttggcagccagcctttatgattcacatgtctcct
gacacgaaagaacattttgctcgtgagtatgattgttacggagacagctacaccgcagag
acagatgtcgcacaactcaaggaagtgttctcaagaatgaaagacaataaggtgatgcct
ttggatgtgattgcagtgttagaggaacgttattcatggaacagctgtccactcagtata
ttcagaggaaacactgtttatgtggactgttatgctattgttaatgatcccagaaccaaa
atccatggaacgatactatcaattagagctttggagctccgtttttatggtgcaaaagtg
gtcttgtgccttgaagagggcgtctctcatgttgttataggagaagatcattcccgagtt
aaagagatgaaagcactcaggagaacatttgggaagaaatttaaaattgtgtctgagctg
tgggtaacagtgtcagtggaggaaggagtcctaaagaatgaaaatcagtacttaatttaa
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