Cuculus canorus (common cuckoo): 104064881
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Entry
104064881 CDS
T08597
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104064881 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cuca03041
]
104064881 (EFTUD2)
Spliceosome [BR:
cuca03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104064881 (EFTUD2)
Complex C
U5 SnRNP specific factors
104064881 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
104064881
NCBI-ProteinID:
XP_053944118
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All DBs
Position
25:complement(6484533..6510522)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDEDELGRESKDLDELEDDDDDDDMGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFASSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacactgacctgtatgacgagtttgggaactacatcgggccagagctggactcggac
gatgacgaggatgagctgggcagagagtccaaggatctggacgagctcgaggatgacgac
gatgatgacgacatgggggaccacgatgaggaccacccggggatggaggtggtgctgcat
gaggataagaaatactaccctaccgccgaggaggtgtacgggcccgaggtggagacgatc
gtgcaggaggaggacacgcagcccctcaccgagcctattattaaacctgtgaaaaccaaa
aagttctccctgatggagcagacgttaccggtcaccgtttatgagatggatttcctggca
gatctgatggacaactcggagctcattcgcaatgtgactctgtgtgggcatcttcaccac
ggcaagacgtgctttgttgactgcctgatagaacagacacaccctgaaatccggaagcgc
tatgaccaggacctttgctacaccgacatattgttcacggagcaagagagaggagtgggg
atcaagagcactccagtgacgattgttttgccggacaccaaagggaagtcttttctcttc
aacatcatcgacactccaggtcacgtcaacttttccgacgaggtgacagccggccttcgc
atttcggacggcgttgtgcttttcatcgatgcagctgagggggtgatgctgaacacagag
agactgatcaagcacgcggtgcaggaaaggctagcggttaccgtgtgcatcaacaagata
gaccggctgatcctggagctgaagttgccccctacggatgcttattacaaactccgacac
atcgtagacgaagttaatggtctcatcagcatgtattccacggacgagaaccttgttctg
tcgccccttctggggaacgtgtgtttcgccagttcacagtacagcatctgcttcacgctg
ggatcttttgcaaagatttatgcagacacatatggagacatcaattatcaggagtttgca
aagcggctttggggcgacatctacttcaacccaaagacccgcaagttcactaagaaggct
ccaacaagcagttcccaacgcagctttgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggatgtggacacaaccctgcccaggactctggatgaacttggc
atccacctgaccaaagaggaattgaaacttaacattcggcccctcctacggctcgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacatcccatcc
ccaaaagtgggagctaagacgaaaatcgagcacacctacaccggtggcgttgactccgat
ctaggggaggccatgagtgaatgcgaccctgatggtccgctgatgtgtcacacaaccaaa
atgtacagcaccgatgacggtgttcagttccacgcctttggcagagtgctcagtgggacc
atccatgctgggcagcctgtgaaggtcctcggggaaaactacaccctggaagatgaggaa
gattcccagatctgcaccgtcggacgtctctggatctcagttgcgaggtaccacatcgag
gtgaaccgggttcctgctggcaactgggtgctgattgaaggagtggaccagcccatagtg
aagacagcaaccgtcacagaacctcggggcaacgaggaggctcagatcttccgccctttg
aagttcaacaccacatctgtcatcaaaatagctgtagagcccgttaacccctcggagctc
cccaaaatgttagacggtctccgcaaagtcaacaagagttacccctcactcactaccaag
gtggaagagtctggggagcacgtgatcctggggacaggggagctctacctggactgtgtg
atgcacgacctacggaagatgtattcagagattgatatcaaggtcgccgacccagtggtg
acattctgtgagacagtggtggaaacgtcctccctgaagtgctttgcggagactcccaac
aagaagaacaagatcacaatgattgctgagcctctggagaagggactcgcagaggacatt
gaaaatgaagtggtccaaatcacgtggaacagaaagaagctgggtgagttcttccagacc
aaatacgactgggatttgctggctgcccgttccatctgggccttcgggccagacgctact
ggcccaaacatcctagtagacgacacgctgccctcggaggtggacaaatcgctgctgggc
tctgtgaaggacagcattgtgcaaggattccagtgggggaccagggaagggcctctctgt
gatgagttgatccgcaatgtgaagtttaagatcctggatgcagtgattgctcaggagccc
ttgcaccggggtggaggacagatcatcccgacggcccggagagtggtctattctgctttc
ctgatggccacccctcgcttgatggagccctactacttcgtggaggtgcaggctcctgcc
gattgcgtgtctgcggtgtacacggtcctggccaggcggagaggccacgtgacacaagat
gctccgatcccgggctcccctctctacaccatcaaagccttcatcccagccattgattcg
tttgggtttgagacagacttgaggacccacacacagggacaagccttctcgctctccgtc
ttccaccactggcagattgtgcctggtgaccccttggacaaaagcatcgttatccgaccc
ctggagccccagccagccccacatctggccagggagttcatgatcaagacccggcgcagg
aagggcttgagcgaggacgtgagcatcagcaagttcttcgatgaccctatgttactggag
ttggccaagcaagacgttgttctcaactaccccatgtga
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