Cuculus canorus (common cuckoo): 104064891
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Entry
104064891 CDS
T08597
Symbol
SCN4A
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cuca04040
]
104064891 (SCN4A)
Ion channels [BR:
cuca04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
104064891 (SCN4A)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
104064891
NCBI-ProteinID:
XP_053944585
LinkDB
All DBs
Position
25:complement(7172490..7223562)
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AA seq
1844 aa
AA seq
DB search
MAGLPYIPGPENLRPFTPASLAAIEKCIAEAEALKIKRQHVELPEEEELKPSSDLGDAGI
EPAPHLWKTPPLELHRKLLLADLDPFYRDRTTFIVLNKGKSIFRFSATPALYMLGPFHPI
RRGAIKVLIHSLFSMFIMITILTNCVFMTLSNPPAWSKNVEYTFTGIYTFESLIKILSRG
FCIDDFTFLRDPWNWLDFMVISMAYITEFVDLGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVRWPPLNDTLLEDLGLDNDT
FVNATLYSNFTDGFIGNFTSNFTSNDTFDFEDYINNEVNHYFLEGALDALLCGNSSDAGK
CPEGYQCMKAGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFV
VVIFLGSFYLINLILAVVAMAYAEQNDATMLEEQQKEEEFQQLMEQLKKHQEEQEKMLQE
RQSSGSSMPSSLAETEQNSDLNSDQDKAKDCNGQVVPKVVLQRSATVIDFDPANKPEKSD
HNHLTVGNQDGPGLEKRTGSAISVLSNAVEELEEAHQKCPPWWYKCTHTFLVWNCCPLWV
KLKEFVKVVVMDPFVDLGITICIVLNTVFMAMEHYPMTEEFENVLTVGNLVFTGIFTAEM
VLKLIALDPYEYFQQGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPT
LNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYIECVCKISIDCTLPRWHMN
DFFHSFLIVFRILCGEWIETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSF
SADSLAASDDDGEMNNLQIAISRITRGLDFIKTSVLMLLRSLWKGKKVAPEEEQEPSKRE
NSVLNHVDTSQESKSEYLDGVTGKEHFLMDELDHMNFINNPHLMVQVPIASEESDLYEET
STQSDTEDAKNLLTSDNTSSLCSTVDYKPPPPVEEEVAEEAEESQEPEECFTESCVKRFP
CLYVDITSDRGKVWWNIRKTCFRIVEHDWFETFIVFMILLSSGALAFEDIYIEQRKVIRT
ILEYADKVFSYIFVIEMLLKWVAYGFKVYFTNAWCWLDFLIVDVSIVSLTANWLGYSELG
AIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFA
GKFYRCVNTTTGDLFDISDVNNKSDCMALLHTNEVRWVNVKVNFDNVGLGYLSLLQVATF
KGGMESMYAAVDSREIEEQPMYEINLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKK
KFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPSNKFQGMVFDFVTKQVFDITIMILI
CLNMVTMMVETDDQSELKTSILYKINLVFIVIFTGECVLKMFALRYYYFTIGWNIFDFVV
VILSILGIVLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGXRTLLFALMMSLPASS
NRSPAFPVMFIYSIFGXSNFAYVKKEAGIDDIFNFETFWEQPSLCLFQITTSAGWXGLLS
PILNSGPPGLWTLTWKTPGSSVKGNCGNPSIGIFFFCSYIIIPFSLLVNMYIAIILENFN
VATEESSEPLCEDDFEMFYETWESLTPDATQFIAYSTLSDFVDTLQEPLKIPKPNKIKLI
TMDLPMVAGDKIHCLDILFALTKEVLGDSGEMDGLKATMEEKFMAANPSKVSYEPITTTL
KRKHEEVCATKIQRAFRRYLLRRSMKQASYMYRHSKDEDDLREDAPEKEGLIATKMREMY
GNSGTDVETAPAFDLAPVPSSETRDPPGKAKAWDKERVVKESLV
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctgccgtacatcccgggccctgagaacctccgccccttcacacctgcctca
ctcgctgccatcgagaagtgcatcgccgaggcagaggcactcaagataaagcggcagcat
gtagagctgcctgaggaagaggagctcaagcccagcagtgacctgggagatgctgggata
gaacctgcccctcatctatggaagaccccaccgttggagcttcatcggaaactcctcttg
gcggacctggaccctttctacagagatagaacgacgtttatagtcctcaacaaagggaag
tccatcttccgcttttcagcaacccctgccctctacatgctggggcccttccatcctatc
cgcagaggagccatcaaagtgcttatccattcattattcagtatgttcatcatgatcacc
attttaaccaactgtgtgtttatgacgctaagcaatcccccagcatggtccaagaacgtg
gaatacaccttcactgggatatacaccttcgaatccctcatcaagatactgtcgagaggc
ttctgcatcgatgacttcacattcctgcgtgacccgtggaattggctggacttcatggtc
atctccatggcctatatcactgagttcgtggacctgggcaacatttcagctctcaggacc
ttccgtgtcctccgtgccttgaaaaccatcactgtgataccagggctgaagactattgtt
ggggctctgatccagtccgtgaagaaactctcagacgtcatgatcctcaccgtcttctgc
ctgagcgtgtttgcccttgttggcctccagctcttcatggggaacctccggcagaagtgt
gtgcggtggcctccccttaatgacaccctgctggaagacttggggctggacaatgacacg
tttgtcaatgcaacactctacagcaacttcaccgacggcttcatcggcaacttcaccagc
aacttcaccagcaacgacacctttgattttgaggactacatcaacaatgaagtcaatcac
tactttctggagggagcgcttgacgccctgctctgtgggaacagcagtgatgctgggaag
tgccctgaaggataccaatgcatgaaggcagggaggaacccgaactatggctacaccagc
tatgataccttcagctgggctttcctggccctcttccgtctcatgacgcaggactattgg
gagaacctcttccagctgacactccgtgcagcagggaaaacgtacatgatcttcttcgtg
gtggttatatttcttggttccttctacctcatcaacctcatccttgcggtggtcgccatg
gcttatgcagaacaaaatgatgccaccatgctggaggagcagcagaaggaggaggaattc
cagcagctcatggagcagctgaagaagcatcaagaggagcaagagaagatgttgcaggag
cggcaatccagcggcagttccatgcccagcagcctggccgagacggagcaaaactcagac
ctgaacagtgaccaggacaaagcaaaggactgcaatgggcaagtggtccccaaggttgtg
ctgcagagatctgcaacggtgattgatttcgacccagccaacaagccagagaaatcggac
cataaccacctcacagtaggcaaccaagatgggccaggccttgagaagaggacggggagt
gccatcagtgtcctctccaatgctgtggaagagctggaggaagctcaccagaagtgccca
ccttggtggtacaaatgtacccacacattcctggtctggaactgctgtccactgtgggtg
aagctgaaggaatttgtcaaggtggtggtgatggaccccttcgtggacctgggcatcacc
atctgcatcgtgctcaacacagtcttcatggccatggagcattaccccatgacagaggag
ttcgagaatgtgctgaccgtggggaacctggtcttcacggggatcttcacggcagagatg
gtcctgaagctcattgctctggacccctacgagtatttccagcagggctggaacatcttt
gacagcatcatcgtcaccttgagcctggtggagctgggcctggccaacgttcaagggctc
tccgtgctccgttctttccgcttgctgagggttttcaaactcgccaagtcctggcccacc
cttaacatgctcatcaagatcatcggcaactcagtgggtgccctggggaacctcacactg
gtactggccatcatcgtcttcatcttcgccgtggtggggatgcagctcttcgggaagagc
tacatagagtgtgtgtgcaagatctccattgactgcacgctgccccgctggcacatgaac
gatttctttcactccttcctcattgtcttccgcatcctctgtggggagtggattgagacc
atgtgggactgcatggaggtggccggccagaccatgtgcctcatcgtcttcatgatggtt
atggtcattgggaaccttgtggtgctgaacctgtttttagctttgctgctgagctccttc
agtgccgatagcctggcagcatcggatgacgatggagagatgaacaatttgcagatcgct
atcagcaggatcaccaggggactcgacttcataaagacatctgtcctcatgctgctccgc
agtctgtggaaagggaagaaggtggccccagaggaagagcaagagcccagtaagagggaa
aactctgtgctaaaccatgtggacactagccaggagtccaagtcagagtacctggatgga
gtcacaggcaaagagcactttttaatggatgaactggaccacatgaatttcattaacaac
ccccatttgatggtgcaagtccccatcgcctcagaggagtccgacctctatgaggagacg
agcacccaatccgacactgaagatgccaagaatctcctcaccagtgacaacacatcatct
ctgtgcagcacggtggattacaagcccccgccaccggtggaggaggaggtggcagaagaa
gctgaggagagccaagagccagaggaatgcttcactgaaagctgtgtgaagaggtttccc
tgcctctatgtggacatcaccagtgacagagggaaggtctggtggaacatccggaaaacc
tgcttccgtattgtggagcatgactggttcgagaccttcatcgtcttcatgatcctcctc
agcagcggagcactggcttttgaagacatctacatcgaacaacgaaaagtgatacgcacc
atcctggagtatgctgacaaggtcttctcctacatctttgtcattgagatgttgctcaag
tgggtggcctatggcttcaaggtgtatttcaccaatgcatggtgctggctggatttcctc
atcgtcgatgtttccattgtcagcctgacggcaaactggctgggatactccgagctggga
gccatcaaatccctgcggacactgagagctctgagaccactgcgtgccctgtccagattt
gagggcatgagggtggttgtgaatgccttgctgggtgctatcccctccatcatgaatgtc
ctgctggtgtgcctcatcttctggctaatattcagcattatgggggtgaacctctttgcc
ggcaagttctaccgatgcgtcaacaccaccacaggggacctcttcgacatcagcgatgtg
aacaacaagagtgactgcatggccctccttcacaccaatgaagtcagatgggtcaacgtc
aaagttaatttcgacaacgtaggcttgggatacctctccttgctgcaggtggcgaccttc
aaaggcggtatggaatcaatgtacgctgctgtggactcacgcgagattgaagagcaacca
atgtatgagatcaacctctacatgtacatctactttgttatcttcatcatcttcggtgcc
ttcttcaccctgaacctcttcattggcgtcatcattgacaacttcaatcagcagaagaaa
aagtttggaggcaaagacatcttcatgacagaagagcagaagaaatactataatgccatg
aaaaagctaggctccaagaaaccccagaagcccatccccaggccttcgaacaagtttcaa
gggatggtgtttgactttgttaccaagcaagtgtttgacataaccatcatgatcctgatt
tgtcttaacatggtgaccatgatggtcgaaacagatgatcaaagcgaactcaaaacatct
atcctctacaagatcaacctggtctttattgtcatcttcactggagagtgtgttctcaaa
atgtttgccttgcgctactactacttcactattggctggaacatctttgactttgtggtg
gtcatactctccatcttaggtattgtcctctcagacatcatagaaaagtacttcgtatca
cctaccctcttcagggtcatcaggctggcaaggattggtcgtgtcctccggctgattcga
ggggcaaaaggcnatcggactctcctctttgctctgatgatgtccctgcctgcctcttca
aatcggtctcctgcttttcctgtcatgttcatctactcaatcttcggantgtccaacttt
gcctatgtaaagaaggaggcaggaattgacgacatcttcaactttgaaactttttgggaa
cagccatcactctgcctcttccagatcaccacatcagctggatggnatggtctcctcagc
ccgatcctgaacagtggtccccctggactgtggaccctgacctggaaaacccctggcagt
tcagtaaaagggaactgtggcaatccgtccattggcatcttcttcttctgcagctacatc
atcattcctttctcattgttggtgaatatgtacattgccatcatcctggagaacttcaac
gtggccacggaggagagcagcgaacccctctgtgaagatgattttgaaatgttttatgaa
acctgggagagtttgaccccagacgccacccagttcattgcatacagcaccttgtctgat
tttgtagacaccttacaggagccactcaaaattcccaagccgaacaagatcaagctaatc
accatggatctaccaatggttgctggggacaaaatccactgtctggatatcctctttgcc
ctgactaaagaagtgctaggagactcgggagagatggatggcttgaaggccaccatggag
gagaagttcatggctgcaaacccctcaaaggtttcctatgagcccatcaccaccactctg
aaaaggaaacatgaggaagtctgtgctacaaaaatccagagggctttccggaggtacctc
ttgaggcgctcgatgaagcaggcatcctacatgtacagacacagtaaggatgaggatgac
ctgagagaggatgcacctgagaaggaaggtctaatcgccaccaaaatgagggagatgtat
gggaacagtgggacagatgtggagacagcccctgcctttgatcttgcacccgttcccagc
tcagagactcgagatcctcctggcaaagcaaaggcatgggataaggaacgtgttgtgaaa
gagtcgctggtataa
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integrated database retrieval system
