Cuculus canorus (common cuckoo): 104066027
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Entry
104066027 CDS
T08597
Symbol
SETDB1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca00310
Lysine degradation
cuca01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
104066027 (SETDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cuca03036
]
104066027 (SETDB1)
Enzymes [BR:
cuca01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
104066027 (SETDB1)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
104066027 (SETDB1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
104066027 (SETDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5604
Tudor_4
Tudor_5
SET
MBD
Pre-SET
Chromo_MORC2_6th
zf-RING_UBOX
zf-C3HC4
WH_PARP12
Motif
Other DBs
NCBI-GeneID:
104066027
NCBI-ProteinID:
XP_053906793
LinkDB
All DBs
Position
28:1047312..1074448
Genome browser
AA seq
1437 aa
AA seq
DB search
MDSQEIKELQEEVMEELGISMEELQEIINKELEKFECVKQRKQQLEELEKCVKQKEEEVA
RVDRLFDDASRDIDKCEHLVIDLYSKLGLQYRESSSEDEELAAKATEVIEIPDEDDDDVL
SVDLSWKTSDGSRRVAKDQTLLREAMAAMRRSAQDVQKFMDAVNKRTNARDAQREAQSLQ
GVPAQSAGPAAPGSDLSSDGDLSVGMRILGKKRSKTWHKGTLIAIRTVGTGKKYKVKFDK
GKSLLSGNHIAYDYHPSPEKHYVGSRVVAKYKDGDRVWLYAGIVAETPNIKNKDRFLIFF
DDGYASYVKEWELYPVCRPLQKTWEDIDDVSSRDFIEEYITAYPNRPMVLLKTGQLIKTE
WEGTWWKSRVEEVDGSLVKILFLDDKRSEWIYRGSTRLEPMFNMKTSTASTQEKKQSGQA
RTRPNVGAVRSKGPVVQYTQDLTGAGTQYKPLEQMQAASLAAQPVSPQPAEMEHWPPAAL
YPSTWTDLLADLSDLQGTENSGFLVGLGCHGPNLSHGRVAHVPPAPGPSGMFLEAQASAE
GGLDEGGTQPRGEGSILENARAPENVLWDFNNFEGERDAVPVHFCHHCGFPIRVYGRLAP
CQHVFCCDCAVLHGQKGKRRCPSCMEPVQQVNLYASCSDSPLAQSRKQVAKKSTSFCPSS
AGSGQSSPPSPVLSDPSLAGRTGAAQQQRLSSSQAGGAAVQPFHGMMDRVPNEPSYRAPL
EKLFYLPHVCSDTCLSRVRPIRSDQYRSKNPLLIPLLYDFRRMTARRRVNRKMGFHVLYK
TPCGLCLRSMQEIERYLFETDCDFLFLEMFCLDPYVLVDRKFQPYKPYYYIADITKGRED
VPLSCVNEIDNTPPPQVAYRKERVPGKGVYINTSLDFLVGCDCKDGCRDKSKCACHQLTV
QATGCTPGGQINPNAGYQHKRLEECLPTGVYECNRRCKCNVNMCTNRLVQHGLQVRLQLF
KTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKE
GYESDAKCSSDSSGVDLKDDEEENTGTEEQEESNEDSSDDNFCKDEDFSTSLVWRSYATR
RQTRGQKENGLSETASKDSGLTRQISHEETALATSCKLPVSEETSKNKVASWLSSNSMSD
GFQDNDSTSSFKMSEGSEAKASKTELPGEKGSASAPGDLDGDSKVSKKDEPEDSTKIPGL
SELGRMYGYNPSPPKLDGIRRPTSKTALLQSRRQSLTPQPTTDDVLTLSSSTDSEGENGQ
AAGGQAPGTTNDSDDIQTISSGSDEEEGDDKKNSLSGSGAVKRQVAVKSTRGFALKSTHG
IAIKSTNLASAEKGESAPDRRTTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQN
VFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAVKCRGRLL
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atggattcacaggagatcaaggagctgcaggaagaagtgatggaggagctcggaatctcc
atggaggagctccaagaaatcatcaacaaagagctggagaagttcgagtgcgtgaagcag
aggaagcagcagctggaggagctggagaagtgtgtgaagcagaaggaagaagaggtggct
cgcgttgaccgtctctttgatgatgcttcgagagacattgataaatgcgagcacttggtg
atagatctgtactccaagctgggcctgcagtatcgggagagcagttccgaggacgaggag
ttggctgccaaagccacagaagtgatcgagatcccagacgaggatgacgacgatgtcttg
agcgttgatttgagctggaagaccagtgatggcagtcgcagagttgcaaaggatcagact
ctgctgcgggaagccatggctgcgatgaggaggtctgcccaggacgttcagaaattcatg
gatgctgtgaacaagagaacaaatgcccgggatgcacaaagagaggcacagagccttcag
ggagttcctgcccagtccgctggccctgcagctcctgggagtgacctcagcagcgatggg
gatctgagcgttggcatgaggatcctgggcaaaaagagaagcaaaacatggcacaaaggg
actctcatcgcaatccggacggttggcactgggaagaagtacaaagtgaagtttgataaa
gggaagagtttgctttctggcaatcacatcgcttatgactatcacccctcgcccgagaaa
cactacgttggcagcagggttgtggcaaaatacaaagacggggatcgggtctggctgtac
gccggcatcgtggccgaaaccccaaacatcaagaataaagacaggttcctgatcttcttt
gatgacggctatgcttcctatgtcaaggagtgggagctctacccagtctgccggccactg
caaaagacctgggaagacatcgatgatgtctcctctcgtgatttcatcgaggagtacatc
acagcctaccccaaccgccccatggtgctgctgaagaccggccagctgatcaaaacggag
tgggaagggacttggtggaaatccagagtggaagaagtggatggcagtctggtcaaaatc
cttttcctggatgacaaacgctccgagtggatttaccggggttccacacgcctcgagccc
atgttcaacatgaaaacttccacagcttccacccaagagaagaagcaaagcggacaagca
aggactcgtcccaacgttggcgctgtcaggagcaaagggcccgtagtccaatacacgcaa
gatttaacgggtgctggcacccagtacaagcctttagagcaaatgcaggcggcctcgctg
gcagcgcagcccgtttctccgcagcctgctgagatggagcactggcccccggctgccttg
tatccctccacttggactgacctgctcgcagacctcagtgacttacaaggcaccgagaac
tcgggatttctggttggtctgggttgtcacggaccaaacctaagccacggccgagttgca
cacgtgcctcctgccccgggcccaagtgggatgttcttggaggcgcaggccagtgccgaa
ggaggcctggatgaaggaggaacccagcctcgtggtgaagggagcattttggagaacgcc
agggcacctgagaacgtgctctgggactttaataactttgaaggggagagagatgctgtc
cccgttcatttttgtcaccactgtggatttcctatccgagtttatggacgcctggccccc
tgccagcatgtcttctgctgcgactgcgccgtgctgcatgggcagaagggaaagaggaga
tgtcccagctgtatggaacccgtgcagcaagtgaatctttacgcttcctgctccgacagt
ccactggcccagtccagaaagcaagtggccaagaaaagcacttccttctgtcccagctct
gcgggctctgggcagtcgtcacctccttcgcctgtcctaagcgatccctctcttgcggga
aggactggggcagcccagcagcagcggctctccagcagccaggcaggcggtgccgccgtg
cagcccttccacgggatgatggaccgtgtgcccaacgaaccttcgtaccgagccccgctg
gagaaactcttctacctaccgcacgtctgcagcgacacttgcctgtcccgcgtccgcccc
atccgcagcgaccagtaccgcagcaagaacccgctgctcatcccgttgctctacgacttc
cgacggatgacagcccgccgccgcgttaaccgcaagatgggcttccatgtcctctacaag
acgccgtgtgggctgtgcctgcgatccatgcaggagatcgagcgctacctctttgagaca
gactgcgattttcttttcctggaaatgttctgcctggacccgtacgtgttggtggatcgc
aaatttcagccttacaaaccctactactacatcgcagacatcaccaaaggcagggaggat
gtgccgttgtcctgcgtcaatgagatcgacaacaccccgccgccgcaggtggcctacaga
aaggaacgcgtccccggaaaaggggtttacatcaataccagcttagacttcctcgtgggc
tgcgactgcaaagacggctgcagagacaaatcgaaatgtgcctgccaccagctgacggtg
caagcgactggctgcaccccaggagggcagatcaaccccaacgcagggtaccagcacaaa
aggctggaagaatgcctcccaacgggagtttacgagtgtaacagaaggtgcaagtgcaat
gtgaatatgtgcaccaaccgcttggtccagcatgggctccaagtccggctgcagttattc
aagacacagaacaaaggctggggcattcgctgcctcgatgacattgctaaaggctctttc
gtctgcatctacgcaggcaagatcctcacggatgactttgctgacaaagagggcttggag
atgggcgacgaatattttgcgaacttggatcacattgagagcgtggagaacttcaaggag
ggctacgagagcgacgcaaaatgctcttctgacagtagcggggtggacctcaaggatgac
gaggaggaaaacacgggcaccgaggagcaggaagagtccaatgaggacagctctgatgac
aacttctgcaaggatgaggacttcagcaccagcttggtctggcgcagctatgccacgcgc
cggcagacccggggccagaaggagaatgggttgtcggagacagcttccaaggactcaggg
ctcacccggcagatcagccatgaagagacggcgctggccacctcctgtaagctgccagtg
tcagaggagacgtccaagaacaaagtggcctcgtggctgagctccaacagcatgtctgat
ggcttccaggataacgacagcacctcctccttcaagatgagcgaaggtagtgaagccaaa
gccagcaaaacagagctccctggtgagaaaggctctgcttctgccccgggagacctggat
ggagattcgaaggtgtcaaagaaagatgaacctgaagattcaaccaaaattccagggctc
agcgagttgggcaggatgtacggctacaacccaagccctcccaaactggatgggatccgg
aggccaacgagcaagacggccctgctgcagagcaggcggcagtccctcacgccgcagccc
accaccgacgacgtgctgaccctgtcgagcagcacggacagtgagggcgagaacgggcag
gcggcgggaggacaggccccgggcaccaccaacgacagcgatgacatccagaccatctcc
tcaggctctgacgaagaggaaggtgacgacaagaaaaactccttgtccggctcaggtgcg
gtgaagaggcaagtggcggtgaaatccacccgcggctttgccctcaaatccactcacggc
atcgccatcaaatccaccaacttggcatcggccgagaagggcgagagcgcgcccgaccgc
agaaccacccgccagttctacgacggagaggagtcctgttacatcatcgatgccaaactg
gaagggaacctgggccggtacctcaaccatagctgcagtcccaacctcttcgtgcagaac
gtttttgtggacacgcatgatctccgcttcccatgggtcgccttcttcgccagcaagagg
atacgcgccggcacagagctgacgtgggattacaactacgaagtgggcagcgtggaaggc
aaagagctgctgtgctgctgcggagccgtcaagtgccgcgggcggctgctgtga
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integrated database retrieval system
