Cheilinus undulatus (humphead wrasse): 121527114
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Entry
121527114 CDS
T07473
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cud
Cheilinus undulatus (humphead wrasse)
Brite
KEGG Orthology (KO) [BR:
cud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cud03036
]
121527114 (smchd1)
03400 DNA repair and recombination proteins [BR:
cud03400
]
121527114 (smchd1)
Chromosome and associated proteins [BR:
cud03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121527114 (smchd1)
DNA repair and recombination proteins [BR:
cud03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121527114 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
HATPase_c
SMC_hinge
CdiI_2
Motif
Other DBs
NCBI-GeneID:
121527114
NCBI-ProteinID:
XP_041669766
LinkDB
All DBs
Position
19:complement(8602375..8655086)
Genome browser
AA seq
1973 aa
AA seq
DB search
MFKSEKRLSASTTEEEKVRKLICVYDCRKKKEEVTPTWLETSGLDFNGFLRNLHQEFSIP
SHETFVLSTTDRKSLDFDKFAELENESTVYLLKTEDQALPVATQELIRFTPHYNTLVESG
KHEYSTCEGKKPFPYALAELVDNALSATVKNKGPRTIEIRMLLDETAGKPAVIVLDNGCG
MSREDLNNWAKYRFSKFKRKNDATGSEGYVRSDPVPRSLNSDISYFGVGGKHSAFYIGES
IRMISRKRGSPDVHELILSKEDFEKKEKNKEDVFSTFLRNRQPGNFKHVLKDDERFLHDL
IREEKTKESFTAVVITEVQPEHITFMKERFKMLTRQLAHIYHYYIHGFNGNDMRSSSTKQ
DQSQKVDIQVTLLEKSNRLPSVMNLREVEDDMQTLYINRAVDTFEFRASTPDDRGKVEGL
IRYHPFLYDRETYPQDPDANQDSQDDDDEGNDDIESEVVHRARQKRPIFDCFWNGRLIPK
NGDFQFEWCTPSKGAKLPAECYNRFSGVLFTDDYFRVATSKLYFVDLELILKNKDIIFTR
VVNEKNQRVNIQREFTLWLQNCHEKHDKQIKFMGYKDTITRPDVPTKKKQHPWETFTSIE
WDGKIYSKGQLVRSQRTQPIYYGTIVQFLRYGITEKNDGSVFATGGEVELALEPKAFHDK
TKIIAISKIDRTATDEAIKKHIENDAAKLPDKLRVEWPENNPWSQNSVYPAGTPLGPLKV
HVLDKNEESVGRMPTVERGPGKKLSIELKIVHHGSEHPEEIACFVARHSAQWAFWFKKLE
GLTKLGKYTLTLKTTIQENETVFGGRELPSYKFNFSIKEGSAHHFVISESVNATVHVGVP
FIIPLQIKDAFNHPVTPPRDLEPELKCSELELSYEKVDTRGTTFNIRGVKAIGKVQNYQH
SKTYDLKVILPGLTEKTQSFKIGLLPGNPHSLHVKPEDEPITVENGLTVKFDLEVHDEAG
NVTANPKQIVHCLIPDLPLTATDCSSTGLGQLETKPINVTMINGEPQTFKATFEMPSKKN
VAAVVREVKVVPSRRVSRMELCSEDDEKLVLRNKEKIEWLAGSTLGDLFYKLYDEAGREV
PLSAEIAAKIKVTWTGDVTEDLAKGKLPDIQVPTQANREQFYQVSYQDQSVSFSFFIIPR
PDEPSRLKATLVQNTVKLGETLPGNVTLELMDQYENVTSTLTSTCVEDILVEADGLDKTS
INFIQEESTSSVIVTGVKFESGALGSRELCFTYKSFVARVIIKVTAGVPAELKLISGPET
PLQVLNDHSIQTPFIIQLCDKWGNPSSDQRVVVELRPSPATLKVMAAVASQPVNAEGKAS
FTVNRVSGPKGYYQLEFIGSFNNKPIPGPSVILTVNSDPNKPVSLSVQYDTSAKFPAGGK
FPVFSVTVESEEGSPITTYSPANVSMLLWEGASSGEIPPQMATELKCSKPMENDRKDCFH
FRDKEIPEHAGKYMIQFSLRISKAKLMWSSQIPINVEADKPVKLGPNSEPPTPVVSYSKD
ISNRTLVENMTLVIMDSHGNPAGQDLKGKVLVSIRNSSEEINRNLPLFQDKSSSYEIDLV
KGKAHIDRLTIMENSPGENGSSYILLFQPEVFMVPLESFKLPFHFYNDTEHQRKMFELTK
RKQKLLSEIAAYKQVLLSKDELYEAFNRTLINANGKEELLRQMLVSSNVISGHSVSFQGI
DRLIQEKTTEINRIRETPRRVFPCRNEYREQPDVLGMVGHLALVMDDAAANVISWHIRGD
MKCVITQTTEAATRIYELTSGRQEVMALESVFVSQDNSLLPHMRHGRPLFQPRGNPVFAR
ELLIYPKDQDCGSCEKVFKNILGNTILIDDLASGNYYRKMVVQSRAPCPTILTREGDRIS
AKGKFGGAQNKAPPVNQLMFGAPLPPQCDVLEAQIDLLRPYRDALKKKNEATKDFNDHLE
SMNSSDTLQQKQELEEKNRQLKEIEGQMVRQAKRPGDAGEPSGIDRKRARPTM
NT seq
5922 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaagcgagaagcgtctttctgcgtccacgacggaggaggaaaaagtccgcaaa
ctgatttgcgtttacgactgccgcaagaaaaaagaagaggttacaccgacatggctggaa
acaagtggtttggacttcaacggctttcttcggaatttgcaccaggaattttcaatccct
tcacatgaaacatttgtgttgtctacaactgacagaaaatccctggattttgacaaattt
gcggagcttgagaatgaaagcaccgtgtatttgttgaagacggaggatcaagctctgcca
gtggcgacccaggagctcatcagattcacgcctcactataacacattggtcgagagtggc
aagcatgagtacagcacttgtgagggcaagaagccatttccatatgcacttgctgagctg
gttgacaatgctctttcagccactgtaaaaaacaaaggtcccaggacaatagagatccgg
atgctcttggatgaaactgctggaaaacctgcagtgattgttttggataacgggtgtggg
atgtcccgagaggatctcaataactgggcaaagtacagattttccaaattcaaaaggaaa
aatgatgcaactggaagtgaaggctatgttcggtctgatcctgtccctcgaagtctcaac
agtgacatatcctactttggggttggaggaaagcattctgccttctacattggagaatca
atcaggatgatcagtagaaaaagaggctccccagatgttcatgagctgattctatccaaa
gaagattttgagaagaaagaaaagaacaaagaagatgtcttcagcacgttcctcagaaac
agacagcccggcaactttaaacatgtgttaaaagatgacgagcgtttcctccatgacctc
attcgtgaagaaaagactaaagaaagctttacagctgtggtcatcaccgaagtccaaccc
gagcatataacctttatgaaagagagatttaaaatgctgaccagacagctagctcacata
taccactattacatccacggattcaatggaaatgacatgagaagcagctctacaaagcag
gatcagtctcaaaaagtagacattcaggtcactttgctggagaaatccaacagactcccc
agtgtgatgaatcttagagaggttgaagatgacatgcagaccctgtacataaacagagct
gtggacacctttgagttcagggcctccactccagacgacagaggcaaagtggagggactc
attcgatatcatcccttcctctatgaccgggagacttaccctcaagaccctgatgccaat
caagactctcaagacgatgatgatgagggtaatgacgacatcgagtctgaagtcgtacat
cgggcaagacagaaaaggccgatattcgattgtttctggaatggacgactcataccaaaa
aatggagactttcagtttgagtggtgcactccttccaaaggagctaagttgcctgcagag
tgttacaatcgtttttctggggtgcttttcacagacgactatttcagggttgccacaagc
aagctctactttgtggacctggagctgatactgaaaaacaaagatattatcttcacccgt
gttgttaatgaaaagaaccagagagtcaacattcagagggagttcacgctatggcttcaa
aactgtcatgagaagcacgacaagcagatcaagttcatgggctacaaggacaccatcaca
cgaccagatgtgcctacaaagaaaaagcagcacccctgggagacgtttacctccatcgaa
tgggatgggaaaatctacagcaaaggccaacttgtgaggtctcagagaacacagcccatt
tattatggcaccatagttcagtttttgcggtatggaattacagaaaaaaatgacggaagt
gtctttgccacaggaggagaggttgaattggctctggaaccaaaggcatttcacgacaag
accaagatcatcgccatttccaagatcgacaggacggccactgacgaagccatcaagaaa
cacattgaaaatgacgctgcaaagcttccagataaactcagagtggagtggcctgaaaat
aacccctggtcacagaattctgtttatccagctgggaccccattaggacctctcaaagtt
catgttctggacaagaatgaagagtcagtgggcaggatgccaacagtggaaagaggacct
gggaaaaaactgagtattgagctcaaaatagtccaccatggttctgaacaccctgaggag
attgcatgttttgttgccagacacagtgcacagtgggctttctggttcaagaaacttgag
ggactgacaaaactggggaagtatacactgactctgaaaactactatacaagaaaatgaa
acagtgtttggaggaagagaactcccaagctacaaattcaatttcagcattaaagaggga
agtgctcaccattttgttatcagtgaatcagtaaacgccaccgttcatgtaggagtgcca
ttcatcattcctctgcagatcaaagatgcctttaatcacccagtcactcctcctcgggat
cttgagcctgaactcaagtgcagtgagctggagctgagttacgagaaagtggacacccgt
gggaccaccttcaacatcagaggtgtcaaagcaataggaaaggttcagaattaccaacat
tcaaagacatacgatctaaaagtcatcctgcctggcctgacagaaaaaacacagagtttc
aaaatcggtcttcttccaggcaatcctcattctctccatgtgaagccagaagatgaacca
atcacagttgagaatggactcactgtcaagtttgatctggaagttcatgatgaggcagga
aatgtcacagctaacccaaagcagatcgttcactgcctgattcctgatcttccattgacg
gccactgactgcagtagcacaggattagggcagcttgagaccaagcccataaacgtgaca
atgatcaatggagaaccacagacattcaaagctacatttgagatgcctagtaagaaaaac
gttgcagcggtggtgcgggaggtaaaggtggttcccagcagaagagtctcgaggatggag
ctctgcagtgaggatgatgagaagctggtgctgaggaacaaggaaaagatcgagtggttg
gctgggagcacgttgggggacttgttctacaaactgtatgacgaggcgggtagggaagta
ccgctttctgcagaaatagctgcgaagatcaaggttacctggacaggagatgtaactgaa
gatctggcaaaagggaagttgcctgacatacaggtgcccacacaggccaacagagaacag
ttctaccaggtgtcctaccaagaccagagtgtgtccttctcctttttcatcatacctcgc
ccagatgaaccatcacgcttgaaagcaactctagtccaaaacacagtaaagctgggtgaa
actctgcctggaaacgtcaccttggagcttatggaccaatatgaaaatgtcacctccacg
cttacctccacctgtgtagaagacatattggtggaagcagacggtttggacaaaacatca
atcaactttatacaagaggagagcaccagctcggttattgttacgggagtcaagtttgag
tctggcgctcttggttccagagagctgtgcttcacctacaagagttttgttgcgcgagtc
atcatcaaagtgacggctggagtccctgcagagctgaaactaatcagtgggcctgaaaca
cctttgcaggtgctgaatgatcatagcatccaaacaccattcattatccagctgtgtgac
aaatgggggaacccttcttcagaccagagggtcgtggtagaactgaggccttcacctgca
acactcaaggtgatggcagctgttgcatcacagccagtgaacgcagaaggaaaagcctcg
ttcactgtgaatagagtgagtggaccaaaggggtactatcagctggagtttattggttcc
ttcaacaacaaacccatccctggtccatcagtcattcttaccgtcaactctgatcccaac
aaacccgtcagtctgtcagtgcagtatgatacctccgccaagtttcctgctggaggcaaa
ttcccagttttctctgtgactgtggagtccgaagaaggaagtccgattacgacttacagc
cctgccaatgtgtccatgctgctgtgggagggagcatcttcaggagagatacctccacaa
atggccaccgagctgaagtgtagcaagccaatggagaatgacaggaaagactgtttccac
ttcagagataaagagataccagaacatgctgggaagtacatgattcagttttctctccgt
ataagcaaagctaaactgatgtggagttctcagattccgatcaatgtggaggccgataaa
cctgtcaaactgggtcccaactcagagccaccaaccccagtggtttcctacagtaaagac
atttccaatcgcaccttagtggagaatatgactcttgtgataatggattcacatggaaac
ccagcaggccaggacctaaaaggaaaggtgcttgtttctatcaggaactccagtgaagag
ataaacagaaacctccctctgtttcaagacaaaagcagcagctatgagattgatttggtc
aaaggaaaggcccacattgataggctgaccatcatggagaacagtccaggtgaaaacggc
agttcgtacatcctgctcttccaacctgaagtttttatggttcctctggagtctttcaag
ctccccttccatttttacaatgatacggagcaccaaagaaaaatgttcgagctgaccaag
aggaaacaaaaactcctcagtgaaatagctgcatataaacaagtccttctctcaaaagat
gaactttatgaagcatttaatcgtacactcataaatgcaaatggcaaagaggagttactg
cgacaaatgctggtcagctcgaacgtgatatcaggacacagtgtttcctttcaaggtatt
gacaggctgatccaagagaagaccaccgaaatcaacaggattcgagagacacccaggaga
gtcttcccctgccgtaatgagtacagggagcagccagacgttttgggaatggttggtcac
ctggcccttgtgatggatgacgctgctgcaaatgttatctcctggcacatcagaggcgac
atgaaatgtgtcattactcaaaccacggaggcagctaccaggatctatgagcttaccagt
ggaaggcaggaggttatggcccttgagagtgtgtttgtgtcccaagacaacagtttgctg
ccacacatgagacacggccgcccgctctttcagccccgtgggaacccggtgttcgccaga
gaactcctcatttaccccaaggaccaagactgtgggagctgtgaaaaagtgttcaaaaac
atccttggaaatactattttgattgacgacctggcgtctggaaactactacagaaagatg
gtggtgcagtcaagggcaccgtgtcctaccatcctgacaagagagggggacaggataagt
gctaagggcaagtttggaggtgcacaaaacaaagcccccccagtcaatcagctaatgttt
ggagcccccctcccaccgcaatgtgacgtcctggaagcacaaatagatctgctccgtcct
taccgagatgctctgaagaaaaagaatgaagcaacaaaggacttcaatgaccacctggag
tccatgaactccagtgacacgctgcaacagaaacaagaactggaggagaaaaacagacag
cttaaggagatcgagggacaaatggtgagacaagcgaaacgccctggggatgctggtgag
ccatcaggcattgacaggaagagagcaaggccaaccatgtag
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integrated database retrieval system
