Corynebacterium ulcerans 0102: CULC0102_1028
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Entry
CULC0102_1028 CDS
T02171
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cue
Corynebacterium ulcerans 0102
Pathway
cue03030
DNA replication
cue03410
Base excision repair
cue03420
Nucleotide excision repair
cue03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cue00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CULC0102_1028 (lig)
03410 Base excision repair
CULC0102_1028 (lig)
03420 Nucleotide excision repair
CULC0102_1028 (lig)
03430 Mismatch repair
CULC0102_1028 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cue03032
]
CULC0102_1028 (lig)
03400 DNA repair and recombination proteins [BR:
cue03400
]
CULC0102_1028 (lig)
Enzymes [BR:
cue01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CULC0102_1028 (lig)
DNA replication proteins [BR:
cue03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CULC0102_1028 (lig)
DNA repair and recombination proteins [BR:
cue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CULC0102_1028 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CULC0102_1028 (lig)
MMR (mismatch excision repair)
DNA ligase
CULC0102_1028 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CULC0102_1028 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAM27227
LinkDB
All DBs
Position
1075923..1077959
Genome browser
AA seq
678 aa
AA seq
DB search
MTDFNIELRRQWDELAEQVRYHRDAYYNGTPEISDQEFDALFQALQRLETEHPELAVPDS
PTLEVGAPVALGSSFNNVEHLERLMSLDNVFDAAELSDWLQRTPAQSYLTELKIDGLSLD
LIYREGKLWRAATRGDGRIGEDVTENAKVIADVPHQLSESAEFPVPELLEVRGEVFIAVE
DFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMICHGLGATKGFTPASQY
HAYEALAAWGLPVSPYTELVHSAAEVQEKVLYWAEHRHDAAHEMDGVVVKVDSISEQRAL
GATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMRPVFVAGSTVSMATLHN
QTEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGAEREFIFPTLCPTCGTRLAPQKE
DDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALGEKAAEDLIRTGVLIDEAGLFNLTE
EDLLKTHVYTTKKKTLNATGAKLLANLEQSKKADLWRVLVALSIRHVGPTAARALAARYH
SMDALRAASAEEIADTEGVGAIIAQSFKDWFELDWHVHIVEQWALAGVTMAEETSQLPEQ
TLAGMTVVVTGSLEGFSRDSAKEAIISRGGKASASVSKKTDYVVVGENAGSKETKARELG
LTILDEAGFIQLLENGSA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtgactgatttcaatatcgaactccgcagacaatgggacgaactcgccgaacaagtgcgg
tatcaccgtgatgcgtactacaacggcacacctgagatcagtgaccaagaatttgatgca
ctgtttcaggcactccaaaggcttgaaacagaacatcccgagctcgcagttccagatagc
cctacgctagaagtcggagcgcctgtggctttgggctctagttttaataacgtagagcac
ctagaacgcctcatgagcttggataacgtgtttgatgctgcggagctttccgactggctc
caaagaacaccagctcagtcgtaccttaccgagctaaagatcgacggactctcgctggat
ctcatctaccgcgaggggaaattatggcgtgctgctacccggggcgacggccggataggc
gaagacgtcacggaaaacgcaaaagtgattgcggatgtgccgcatcagcttagtgaaagc
gcagagttccctgttcccgaactcttggaagttcgaggcgaagtcttcatcgccgtagaa
gactttgcagcggttaacgagcaacgccaattagaggggggaaaaccctttgctaatccg
cgaaatgctgctgccgggtcattgagacaaaaagacgttgaggctgttaaaaagcgccga
cttcggatgatctgtcatgggcttggcgctaccaaaggctttaccccagcgtcgcagtat
cacgcgtacgaggcgttggcggcgtggggattgcctgtgtctccctataccgagctggtt
cactcggcagcagaggtacaggaaaaggttctttattgggcggaacaccgtcacgacgca
gcacatgagatggacggtgttgtagtcaaagtagatagcatctcagagcagcgggcattg
ggtgctacagctagagcccctcgctgggctatcgcctacaaatatccgccagaagaagtc
accacggagcttttagacattcaggtgggagtaggaaggaccgggcgtgtcacacctttc
gctgtcatgcgtcccgtctttgttgccggatccactgtgtccatggcaacgctgcataac
caaacggaagtaaaacgtaaaggggtgctcataggagacaccgtggtgatccgcaaagcc
ggtgaggtgatcccagaagtccttggaccggtagtggaaaagcgagacggggctgaacgt
gagtttattttccccacgttgtgccctacctgcggtacccggcttgctccccaaaaagag
gatgatgcggactggcgttgccccaattctcagtcatgcccggctcagctcagcacacgt
ctaacctatctcgcagggcgtggtgcctttgatattgaggctttgggagaaaaagcggcg
gaggatcttatccggacgggcgtgcttatcgacgaagccgggttgtttaatctcacagaa
gaagaccttctcaagacccatgtgtacacgacaaagaaaaagacactaaatgctacaggg
gccaagctgctggccaacttagaacaatcgaaaaaagctgacctttggcgggttctcgtt
gcactatccattagacacgttggtcccaccgccgctcgagctctggctgcccgctatcac
tctatggacgcattgcgcgcagccagcgcggaagaaatcgccgatactgaaggcgtaggg
gccatcattgcacaaagcttcaaggattggttcgagcttgattggcacgtccacatcgta
gaacagtgggctctcgccggcgtgactatggccgaagagacctctcaactaccggaacag
acattggcaggcatgactgttgttgttactggttctttggaaggatttagccgcgactct
gctaaagaagccattattagtcgtggcggtaaggcatccgcatcggtttctaaaaaaact
gactatgttgttgtcggagaaaacgctggttctaaggaaactaaagcgcgagaactcgga
ctcaccattctcgatgaagctggctttatccaactactagaaaacgggtcggcataa
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