Cupriavidus necator NH9: BJN34_10515
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Entry
BJN34_10515 CDS
T05121
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cuh
Cupriavidus necator NH9
Pathway
cuh03030
DNA replication
cuh03410
Base excision repair
cuh03420
Nucleotide excision repair
cuh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cuh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJN34_10515 (ligA)
03410 Base excision repair
BJN34_10515 (ligA)
03420 Nucleotide excision repair
BJN34_10515 (ligA)
03430 Mismatch repair
BJN34_10515 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cuh03032
]
BJN34_10515 (ligA)
03400 DNA repair and recombination proteins [BR:
cuh03400
]
BJN34_10515 (ligA)
Enzymes [BR:
cuh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BJN34_10515 (ligA)
DNA replication proteins [BR:
cuh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BJN34_10515 (ligA)
DNA repair and recombination proteins [BR:
cuh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BJN34_10515 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJN34_10515 (ligA)
MMR (mismatch excision repair)
DNA ligase
BJN34_10515 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BJN34_10515 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AQV94321
UniProt:
A0A1U9UPZ4
LinkDB
All DBs
Position
1:complement(2314667..2316796)
Genome browser
AA seq
709 aa
AA seq
DB search
MTATHRGAQADASAPVGALPPEAAARRVAWLRDELDRHNHQYYVLDAPTIPDAEYDALFS
ELQALELEHPELQTPDSPTQRVGGEPLSAFDSVRHRVPMLSLNNGFADEDVLNFDRRCAQ
GLGRTAPAAGEQDLFSAADAVEYACELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTV
NVRTIKAIPLKLRGQAPAVLEVRGEVFMFRRDFDKLNERQAEAGEKTFVNPRNAAAGSLR
QLDPRITARRPLSFFAYGLGELQGVDRPPTHSAMLDGFAALGLPVCKDREVVKGAQGLLD
FYRDIGQRRDALPYDIDGVVYKVNALADQERLGFVSRAPRFALAHKFPAQEMTTIVEDIE
VQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVV
GVVTERRPADARAFVMPTACPVCGSHIEKLEDEAIARCTGGLICAAQRKQSLLHFAQRRA
MDIEGLGDKLVEQLVDQGIVRTPADLFKLGVAKLAALERMADKSAANLVAAIDTSRETTM
NRFIFALGIRHVGEATAKDLAKHFGKLDALMAADEAALLEVNDVGPVVAQSIAHFFAEPH
NVEVIEQLRAAGVHWTESEPAAKATAPLSGKTFVLTGTLPTLSREDAKELLEAAGAKVAG
SVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAGMLALLAEAGAAPTQD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaacacaccgcggcgcgcaggcagatgcctccgcgcccgtcggcgccttgccg
cccgaagctgcagccaggcgcgtggcctggctgcgcgacgagctggaccgccacaatcac
cagtattacgtgctcgacgcgccgaccattcccgatgcggaatacgacgcgctgttcagc
gaactgcaggccctggagctcgagcatcccgagctgcagacgccggactcgcccacgcag
cgcgtgggcggtgaaccgctgtccgccttcgactcggtgcgccaccgcgtgccgatgctg
tcgctcaacaacggcttcgccgacgaagacgtgctgaacttcgaccgccgctgcgcgcag
ggcctgggccgcaccgcgcccgccgccggcgagcaggacctgttcagcgcggccgacgcg
gtcgagtacgcctgcgagctgaagttcgacggcctggccatgtcgctgcgttatgaggac
ggccggctggtgcaggccgctacccgcggcgatggcgagaccggcgaggacgtcaccgtc
aacgtgcgcaccatcaaggcgatcccgctgaagctgcgcggccaggcgcccgcggtgctg
gaagtgcgcggcgaggtcttcatgttccgccgcgacttcgacaagctcaacgagcgccag
gccgaggccggcgagaagaccttcgtcaacccgcgcaacgccgccgcgggcagcctgcgc
cagctcgatccgcgcattaccgccaggcggccgctgtcgttcttcgcctatggcctgggt
gagttgcagggcgtggatcgcccgccgacccacagcgccatgctcgacggctttgccgcg
ctgggcctgcccgtgtgcaaggaccgcgaggtggtgaagggcgcgcaggggctgctggac
ttctatcgcgatatcggccagcgccgcgacgcgctgccgtatgacatcgacggcgtggtc
tacaaggtcaatgcgctggccgaccaggagcgcctgggctttgtctcgcgcgcaccgcgc
tttgcgctggcgcacaagttcccggcgcaggaaatgaccaccatcgtcgaggacatcgag
gtgcaggtcggccgcaccggcgcgatcacgccggtggcacggctcaagcccgtctttgtc
ggcggcgtgaccgtgaccaatgccacgctgcacaacgaggacgagatccgccgcaaggac
gtgcatatcggcgacaccgtgatcgtgcgccgcgccggcgacgtgatcccggaagtggtc
ggcgtggtgaccgagcgccgcccggccgacgcacgcgccttcgtgatgccgaccgcctgc
ccggtgtgcggctcgcacatcgagaagctcgaggacgaagccatcgcccgctgcaccggc
gggctgatctgcgcggcgcagcgcaagcagtcgctgctgcatttcgcgcagcggcgcgcc
atggatatcgaaggcctgggcgacaagctggtcgaacaactggtcgaccagggcatcgtg
cgcacgccggctgatttgttcaagctgggcgtggccaagctggctgcgctggagcgcatg
gccgacaagtcggcggccaacctggtggcggcgatcgacacgtcgcgcgagaccaccatg
aaccgctttatcttcgcgctgggcatccgccatgtgggcgaagccacggccaaggacctg
gccaagcatttcggcaagctggatgcgctgatggcggctgatgaagcggcgctgctggag
gtgaacgacgtcggcccggtggtggcgcagtcgatcgcgcacttctttgccgagccgcac
aatgtcgaggtcatcgaacaactgcgcgccgcgggcgtacactggacggaaagcgagccg
gcggccaaggccacggcgccgctgtcgggcaagactttcgtgctgaccggcacgctgccc
accctgtcgcgcgaagatgccaaggagctgctggaagccgccggcgccaaagtggcgggt
tcggtatcgaagaagaccgactacgtcgtcgcgggcgctgaagccggcagcaagctcgac
aaggccgaggcgctgggcgtgccggtgctggacgaggccggcatgctggcgctgctggca
gaagccggcgccgcgccgacacaggactaa
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