Cupriavidus sp. EM10: KLP38_09030
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Entry
KLP38_09030 CDS
T10452
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cupe Cupriavidus sp. EM10
Pathway
cupe03030
DNA replication
cupe03410
Base excision repair
cupe03420
Nucleotide excision repair
cupe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cupe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KLP38_09030 (ligA)
03410 Base excision repair
KLP38_09030 (ligA)
03420 Nucleotide excision repair
KLP38_09030 (ligA)
03430 Mismatch repair
KLP38_09030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cupe03032
]
KLP38_09030 (ligA)
03400 DNA repair and recombination proteins [BR:
cupe03400
]
KLP38_09030 (ligA)
Enzymes [BR:
cupe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KLP38_09030 (ligA)
DNA replication proteins [BR:
cupe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KLP38_09030 (ligA)
DNA repair and recombination proteins [BR:
cupe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KLP38_09030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KLP38_09030 (ligA)
MMR (mismatch excision repair)
DNA ligase
KLP38_09030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KLP38_09030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QWE93199
LinkDB
All DBs
Position
1:complement(1872258..1874324)
Genome browser
AA seq
688 aa
AA seq
DB search
MQWLRAELERHSYQYYVLDEPTIPDAEYDALFSELQALETEHPDLLTDDSPTQRVGGAPL
AAFDTVRHRVPMLSLNNGFEDEDVVNFDRRCAQGLGKAAVAAPADDLFGAADADENAVEY
SCELKFDGLAMSLRYEDGRFVQAATRGDGETGEDVTANVRTIKAIPLKLRGKAPAVLEVR
GEVFMYRADFDKLNARQAEAGEKTFVNPRNAAAGSLRQLDPRITAKRPLSFFAYGLGELQ
GADRPATHSVMLDGFAALGLPVCDERRVVKGAQGLLSFHRDIGERRDQLPYDIDGVVYKV
NAIPEQEQLGFVSRAPRFALAHKFPAQEMTTTVEDIEVQVGRTGAITPVARLAPVFVGGV
TVTNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVVAVVLERRPADARAFVMPTACPVC
GSHVEKLEGEAIARCTGGLICAAQRKQALIHFAQRRAMDVDGLGDKIVEQLVDMGIVRTP
ADLYKLGVAKLAALDRMADKSATNLVEAIDKSRETTLNRFIFALGIRHVGEATAKDLAKH
FGKLDNLLAADEAALLEVNDVGPVVAQSIANFLAESHNVEVIEQLRAAGVHWVESEPTAR
APLPLAGKTIVLTGTLPTLSREDAKEKLEAAGAKVAGSVSKKTDYVVAGAEAGSKLEKAQ
TLGVPVLDEDGMLKLLADAGAADNGESQ
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtgcaatggctgcgcgccgagctggaacgccatagctaccagtattacgtgctcgacgag
ccgacgattcccgatgcggaatacgacgcgctgttcagcgagctgcaggcgctggagacc
gaacatcccgatctgctgaccgacgattcgcccacgcagcgcgtgggtggcgcgccgctg
gccgcgttcgacacggtgcgccatcgcgtgccgatgctgtcgctgaacaacggcttcgaa
gacgaggatgtggtcaatttcgaccgccgttgcgcgcaggggctgggcaaggccgccgtc
gccgcgccggccgacgacctgttcggcgccgctgacgccgacgaaaatgccgtcgagtac
tcgtgcgaactgaagttcgacgggttggccatgtcgctgcgctacgaggacggcaggttc
gtgcaggccgccacgcgcggcgacggcgagaccggcgaggacgtgaccgccaatgtgcgc
acgatcaaggccattccgctgaagctgcgcggcaaggcgccggccgtgctggaagtgcgc
ggcgaagtgttcatgtaccgcgccgatttcgacaagctcaacgcgcgccaggccgaggcc
ggcgagaagaccttcgtcaatccgcgcaatgccgccgctggcagcctgcggcagctggat
ccccggatcacggccaagcggccgctgtcgttctttgcctacggcctgggcgaattgcag
ggcgccgaccggcccgccacgcacagcgtgatgctggacgggtttgccgcgctgggcctg
ccggtctgcgacgaacgccgcgtggtcaagggcgcgcaggggctgctgtcgttccatcgc
gatatcggcgagcgccgcgaccagctgccgtatgacatcgacggcgtggtctacaaggtc
aacgccatccccgagcaggaacagctgggctttgtctcgcgcgccccgcgctttgcgctg
gcgcacaagtttccggcgcaggagatgaccaccacggtcgaggatatcgaggtgcaggtg
ggccgtaccggcgccatcaccccggtggcgcggctggcgccggtgttcgtcggcggcgtg
accgtgaccaacgccacgctgcataacgaggacgagatccgccgcaaggatgtgcatatt
ggcgatacggtgattgtccgccgcgctggcgacgtgatcccggaggtggtggccgtggtg
ctggaacgccggcccgccgacgcccgcgccttcgtgatgccgaccgcctgcccggtatgc
ggatcgcacgtcgaaaagctcgaaggcgaggccatcgcccgctgcacgggtggcctgatc
tgcgcggcccaacgcaagcaggcgctgatccatttcgcgcaacggcgcgcgatggacgtg
gatggcctgggcgacaagatcgtcgagcagctggtggacatgggcatcgtccgcacgccg
gccgatctctacaagctcggcgtggccaagctggccgcgctggaccgcatggccgacaag
tcggccacgaacctggtggaggccatcgacaagtcgcgcgagaccacgctgaaccggttt
attttcgcgctgggcatccgtcacgtcggagaagccacggccaaggacctggccaagcac
ttcggcaagctggacaacctgctggccgccgacgaggcggcgctcctcgaagtgaacgac
gtgggtccggtggtggcgcaatcgatcgccaatttcctggccgaatcgcataacgtcgag
gtgatcgagcagttgcgcgccgcgggcgtacactgggtggaatcggaacccaccgcacgg
gcaccgctgccgctggccggcaagaccatcgtgctgaccggcacgctgccgacgctgtcg
cgcgaggacgccaaggaaaagctggaggcagcgggtgccaaggtggccggttcggtatcg
aagaagaccgactacgtggtggctggtgccgaggcaggcagcaagctggagaaagcccag
acgctgggcgtgcccgtgctggacgaggatggcatgctgaagctgctggccgacgcgggt
gcggcagacaacggagaatcgcaatga
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