Curtobacterium sp. C1: LQK89_04665
Help
Entry
LQK89_04665 CDS
T10648
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
curz Curtobacterium sp. C1
Pathway
curz03030
DNA replication
curz03410
Base excision repair
curz03420
Nucleotide excision repair
curz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
curz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQK89_04665 (ligA)
03410 Base excision repair
LQK89_04665 (ligA)
03420 Nucleotide excision repair
LQK89_04665 (ligA)
03430 Mismatch repair
LQK89_04665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
curz03032
]
LQK89_04665 (ligA)
03400 DNA repair and recombination proteins [BR:
curz03400
]
LQK89_04665 (ligA)
Enzymes [BR:
curz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LQK89_04665 (ligA)
DNA replication proteins [BR:
curz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LQK89_04665 (ligA)
DNA repair and recombination proteins [BR:
curz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LQK89_04665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LQK89_04665 (ligA)
MMR (mismatch excision repair)
DNA ligase
LQK89_04665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LQK89_04665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
RNA_lig_T4_1
Nlig-Ia
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UFU14998
LinkDB
All DBs
Position
941327..943693
Genome browser
AA seq
788 aa
AA seq
DB search
MSETDATFETIDPDDLDAAQAQREVDRLRVRINELRDQYYEGNGSTVSDGEYDGLVHRLD
AVEQRFPDLLTPDSPTQTVGGQAQTVQFAPVEHAERMLSLDNVFSPDELTDWAVKVQRDA
GAERVRFLTELKIDGLAINLRYEHGRLVSAATRGDGVVGEDVTGNVRTMGTIPDRLAGTG
HPPLVEVRGEIFFPVEQFDELNARQRDAGERVFANPRNAAAGSLRQKEEGKSEAKRALMV
DRLQRLRMLVHGIGAWPVRELESETDVHAQSEVYELLQTWGLPTSTHYRVFDTIDEVQAF
VRDYGDRRSSVEHQIDGIVIKVDDLALHEELGSTSRAPRWAIAYKYPPEEVHTKLLDVVV
SVGRTGRATPFAVMEPAEVAGSVVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLG
PVVELRDGSEREFVMPENCPECGTPLRPAKEGDKDLRCPNARSCPAQVRGRVEHIASRGS
LDIEGLGEVAAAALTQPLHPETPPLVTEAGLFDLTMEDIVGIEVIVRDAETGMEKTDEDG
TPKRVTPFSRARKKTDPPFDSDARGADHTGAPSRYPSKNAFEMLANIDAAKTKPLWRILV
GLSIRHVGPVAARALANHFGSLDRIREASREDLAAVDGVGGIIADALIDWFAVDWHREII
DRWTAAGVQFTTPDHPGPGAAVEGGVLTGLTVVATGSLEGYTREGAQEAIIAAGGKAASS
VSKKTDYVAAGPGAGSKLTKAEQLGVRIIDAEQFRLLVTEGPDAIAPEPEPEGETAEPEA
AAPDTAAD
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaccgacgccacgttcgagaccatcgacccggacgacctcgacgcggcccag
gcccagcgcgaggtcgaccggctgcgcgtgcgcatcaacgagctgcgcgaccagtactac
gagggcaacggctcgacggtctccgacggcgagtacgacgggctcgtgcaccgcctcgac
gccgtcgagcagcggttcccggacctgctcacgccggacagcccgacgcagaccgtcggc
ggccaggcgcagaccgtgcagttcgcgccggtcgagcacgccgagcggatgctgagcctg
gacaacgtgttcagccccgacgagctgaccgactgggccgtcaaggtgcagcgggacgcc
ggcgccgagcgcgtgcggttcctcaccgagctgaagatcgacgggctcgccatcaacctg
cggtacgagcacggacggctggtctcggcggcgacccgcggcgacggcgtggtcggcgag
gacgtcaccgggaacgtgcggacgatgggcacgatcccggaccggctcgccggcaccggg
cacccgcccctggtcgaggtgcggggcgagatcttcttcccggtcgagcagttcgacgag
ctgaacgcccggcagcgcgacgcgggggagcgcgtcttcgcgaacccgcggaacgccgcg
gcggggtccctccggcagaaggaggagggcaagtccgaggcgaagcgggcgctcatggtg
gaccgcctgcagcgcctgcggatgctcgtgcacgggatcggtgcgtggccggtgcgggag
ctcgagtccgagaccgacgtgcacgcccagtccgaggtgtacgagctgctgcagacgtgg
ggtctgccgacgagcacgcactaccgggtgttcgacaccatcgacgaggtgcaggcgttc
gtccgtgactacggcgaccgccggtcctcggtggagcaccagatcgacggcatcgtgatc
aaggtcgacgacctggccctgcacgaggagctcgggtcgacctcgcgggcgccgcggtgg
gcgatcgcctacaagtacccgccggaagaggtccacacgaagctcctcgacgtggtcgtc
agcgtcgggcgcaccggccgggccaccccgttcgccgtcatggagccggccgaggtcgcc
gggtcggtcgtgcgccaggcgaccctgcacaaccaggacgtcgtcaaggccaagggcgtg
ctcatcggcgacacggtcgtgctccggaaggccggcgacgtcatccccgaggtcctcggc
ccggtggtcgagctccgcgacggcagcgagcgcgagttcgtgatgcccgagaactgcccg
gagtgcggcacgccgctccgcccggcgaaggagggcgacaaggacctgcgctgcccgaac
gcccgcagctgcccggcgcaggtgcgcggtcgtgtcgagcacatcgcgtcccgcggttcg
ctcgacatcgagggcctcggcgaggtcgccgccgccgccctgacccagccgctccacccc
gagacgccgccgctcgtgaccgaggccgggctgttcgacctgacgatggaggacatcgtc
gggatcgaggtcatcgtccgcgacgccgagaccggcatggagaagaccgacgaggacggc
accccgaagcgtgtgacgccgttcagccgggcgcgcaagaagaccgacccgccgttcgac
tccgacgcccgcggcgcggaccacaccggcgcgccgagccggtacccgtcgaagaacgcg
ttcgagatgctcgcgaacatcgacgccgcgaagacgaagccgctctggcgcatcctggtc
ggcctgagcatccggcacgtcggaccggtcgccgcgcgtgccctcgcgaaccacttcggc
tcgctcgaccggatccgcgaggcctctcgcgaggacctcgcggcggtggacggcgtcggt
gggatcatcgcggacgccctgatcgactggttcgccgtcgactggcaccgcgagatcatc
gaccgctggacggccgccggcgtgcagttcaccacgcccgaccacccggggcccggtgcc
gcggtggagggcggcgtgctgaccggcctgacggtcgtcgcgacggggtccctcgagggg
tacacccgcgaaggcgcgcaggaggcgatcatcgccgcgggcggcaaggccgcgtcgagc
gtcagcaagaagaccgactacgtcgccgccggccccggagccgggtcgaagctcacgaag
gccgagcagctcggcgtccggatcatcgacgcggagcagttccggctgctcgtcaccgag
gggccggacgcgatcgcgccggaacccgagccggaaggcgagaccgccgagcccgaggcc
gccgcgccggacaccgccgcggactga
DBGET
integrated database retrieval system
