Corynebacterium ramonii FRC0011: CulFRC11_0924
Help
Entry
CulFRC11_0924 CDS
T03408
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cus
Corynebacterium ramonii FRC0011
Pathway
cus03030
DNA replication
cus03410
Base excision repair
cus03420
Nucleotide excision repair
cus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CulFRC11_0924 (ligA)
03410 Base excision repair
CulFRC11_0924 (ligA)
03420 Nucleotide excision repair
CulFRC11_0924 (ligA)
03430 Mismatch repair
CulFRC11_0924 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cus03032
]
CulFRC11_0924 (ligA)
03400 DNA repair and recombination proteins [BR:
cus03400
]
CulFRC11_0924 (ligA)
Enzymes [BR:
cus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CulFRC11_0924 (ligA)
DNA replication proteins [BR:
cus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CulFRC11_0924 (ligA)
DNA repair and recombination proteins [BR:
cus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CulFRC11_0924 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CulFRC11_0924 (ligA)
MMR (mismatch excision repair)
DNA ligase
CulFRC11_0924 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CulFRC11_0924 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AIU32509
LinkDB
All DBs
Position
985131..987230
Genome browser
AA seq
699 aa
AA seq
DB search
MKGSVWGQKPLKLSTNDKLASVTDSNIELRRQWDELAEQVRYHRDAYYNGTPEISDQDFD
ALFQALQRLETEHPELAVPDSPTLEVGAPVALGSSFNNVEHLERLMSLDNVFDAAELSDW
LQRTPAQSYLTELKIDGLSLDLIYREGKLWRAATRGDGRIGEDVTENAKVIADVPHQLCE
SAEFPVPELLEVRGEVFIAVEDFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKR
RLRMICHGLGATKGFTPASQYHAYEALAAWGLPVSPYTELVHSAAEVQEKVLYWAEHRHD
AAHEMDGVVVKVDSISEQRALGATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTP
FAVMRPVFVAGSTVSMATLHNQTEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGTE
REFIFPTLCPTCGTRLAPQKEDDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALGEKA
AEDLIRTGVLIDEAGLFNLTEEDLLKTRVYTTKKKTLNATGAKLLANLEQSKKADLWRVL
VALSIRHVGPTAARALAARYHSMDALRAASAEEIADTEGVGAIIAQSFKDWFELDWHVHI
VEQWALAGVTMAEETSQLPEQTLAGMTVVVTGSLEGFSRDSAKEAIISRGGKASTSVSKK
TDYVVVGENAGSKETKARELGLTILDEAGFIQLLENGSA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcagcgtatggggtcagaagccgctgaagttaagcaccaacgataaactagct
agcgtgactgattccaatatcgaactccgcagacaatgggacgaactcgccgaacaagtg
cggtatcaccgtgatgcgtactacaacggcacacctgagatcagtgaccaagactttgat
gcactgtttcaggcactccaaaggcttgaaacagaacaccccgaactcgcagttccagat
agccctactttagaagtcggagcgcctgtagctttgggctctagttttaataacgtagag
cacctggaacgtctcatgagcttggataacgtgtttgatgctgcggagctttccgactgg
ctccaaagaacaccggcgcagtcgtaccttaccgagctaaagatcgacggactctcgcta
gacctcatttaccgcgagggaaaactatggcgtgcggctacccgcggcgacggccggata
ggcgaagacgtcacggaaaacgcaaaagtgattgcggatgtgccgcatcagctttgtgaa
agcgcagagttccctgttcccgagctattggaagttcgaggcgaagtcttcatcgccgta
gaagattttgcagcggttaacgagcaacgccaattagagggggggaaaccctttgctaat
ccgcgaaatgctgctgccgggtcattgagacaaaaagacgttgaggctgttaaaaagcgc
cgacttcggatgatctgtcatgggcttggcgctaccaaaggctttaccccagcgtcgcag
tatcacgcgtacgaggcgttggcggcgtggggattgcctgtgtctccctacaccgagttg
gttcactcagcggcagaagtgcaggaaaaagttctgtattgggcagaacaccgtcacgac
gcagcccatgagatggacggggttgtagtcaaagtagacagtatctcagagcagcgggca
ttgggtgctacagcccgtgcccctcgatgggctatcgcctacaaatatccaccagaagaa
gtcaccacggagcttttagatattcaggtgggcgtaggaaggaccgggcgtgtcaccccc
ttcgccgttatgcgccctgtttttgtcgccggatccactgtgtccatggcaacgctgcac
aaccaaacggaagtaaaacgtaaaggggtgctcataggagacaccgtggtgatccgcaaa
gccggtgaggtgatcccagaagtccttggaccggtagtggaaaagcgagacgggactgaa
cgtgagtttattttccccacgttgtgccctacctgtggtacccggcttgctccgcaaaaa
gaagatgatgcggactggcgctgtcccaattctcagtcatgcccggcccagctcagcacg
cgtctaacctatctcgcaggacgcggtgcctttgatattgaggctttgggagaaaaagcg
gcggaggatcttatccggacgggcgtgcttatcgacgaagccgggttgtttaatctcaca
gaagaagaccttctcaagacccgtgtgtacacgacaaagaaaaagacactaaatgctaca
ggggccaagctgctggccaacttagaacaatcgaaaaaagctgacctttggcgggttctc
gttgcactatccattaggcacgttggtcccaccgccgctcgagctctagctgcccgctat
cactctatggacgcattgcgcgcagccagcgcggaagaaatcgccgatactgaaggtgta
ggggccatcattgcacaaagcttcaaggattggttcgagcttgattggcacgtccacatc
gtagaacagtgggctctcgccggcgtgactatggccgaagagacctctcaactaccggaa
cagacattggcaggcatgaccgttgttgttactggttctttggaaggatttagccgcgac
tctgctaaagaagccattattagccgtggcggtaaggcatccacatcggtttctaaaaaa
actgactatgttgttgtcggagaaaacgctggttctaaggaaaccaaagcgcgagaactc
ggactcaccattctcgatgaagctggctttatccaactactagaaaacgggtcggcataa
DBGET
integrated database retrieval system
