Corynebacterium uberis: LH390_04880
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Entry
LH390_04880 CDS
T08128
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cuw
Corynebacterium uberis
Pathway
cuw03030
DNA replication
cuw03410
Base excision repair
cuw03420
Nucleotide excision repair
cuw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cuw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH390_04880 (ligA)
03410 Base excision repair
LH390_04880 (ligA)
03420 Nucleotide excision repair
LH390_04880 (ligA)
03430 Mismatch repair
LH390_04880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cuw03032
]
LH390_04880 (ligA)
03400 DNA repair and recombination proteins [BR:
cuw03400
]
LH390_04880 (ligA)
Enzymes [BR:
cuw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LH390_04880 (ligA)
DNA replication proteins [BR:
cuw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LH390_04880 (ligA)
DNA repair and recombination proteins [BR:
cuw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LH390_04880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH390_04880 (ligA)
MMR (mismatch excision repair)
DNA ligase
LH390_04880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LH390_04880 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
DUF4796_N
HHH
Motif
Other DBs
NCBI-ProteinID:
UDL85544
LinkDB
All DBs
Position
1044722..1046842
Genome browser
AA seq
706 aa
AA seq
DB search
MGTTLLSAWDPPIESEGVTDTKDNNEQLRRHWDELASAVRYHRQRYYNGTPELPDGEFDA
LFSQLVALEKDHPELAVPDSPTMEVGAPTPEGSNFADVTHLERMYSLDNVFSAEELADWL
ARTPAPAYLTELKIDGLSIDLVYRDGHLERAATRGDGTTGEDITANAKVISDIPHQLTGT
REYPVPALVEIRGEVFIAVEDFADVNEQRQAAGGKPFANPRNAAAGSLRQKNVEDVRRRR
LRMICHGIGAREGFHPTTQHQAYQALRAWGLPVSDYTRQVHSVEEVQEQVAYWAQHRHDA
LHEMDGLVIKVDDIAEQRKLGATSRAPRWAIAYKYPPEEVTTQLLDIRVGVGRTGRVTPF
AVMEPVLVAGSTVAMATLHNQTEVARKGVLIGDTVVIRKAGEVIPEVLGPVAERRDGTER
AFVFPALCPVCGTRLAPQKEDDADWRCPNHRSCPAQLTARLTYLAGRGAFDIEALGEKGA
RDLIASGVLKDEATLFDLTEEDLKATAVYTTKKKTVNAGGRSLIRNLEQARHAQLWRVIV
ALSIRHVGPTAARALAAHFHSLPALADAPADELADIDGVGTIIAQSVVDWFAVDWHRGIV
AAWARAGVTMEEDAPEGKELTLDGLTVVVTGTLEGFTRDGAKEAIASRGGKAAGSVSKKT
DYVVAGPGAGSKAAKAEQLGVPILTEAEFVALLAGELGQDGAADGS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaaccctactttccgcctgggacccaccgatagaatcggaaggcgtgactgac
accaaggacaataatgagcagctgcgccgtcattgggatgagcttgcctccgccgtgcgc
taccaccggcagcgctattacaacggcacccccgaactgccggacggagaatttgacgca
ttattttcccagctcgtggccctggagaaggaccacccggagcttgcggtgccggatagt
cccaccatggaagtgggtgccccaaccccggaggggtccaactttgcggacgtcacccac
ctcgaacgcatgtactcattggacaacgtcttttccgccgaagaactcgccgactggctg
gcccgcacccccgccccggcctacctgacggaactgaaaatcgacggcctgtccatcgac
ctggtctaccgggacggccacctggagcgcgccgccacccgcggcgacggcaccacgggc
gaggacatcaccgccaacgccaaggtcatctcggacatcccccaccagctcaccggaacc
agagaataccccgtcccagccttggtggagattcgtggcgaagtcttcatcgccgtggaa
gacttcgcggacgtcaacgagcagcgccaggcagccggaggcaagccctttgccaatccc
cgcaacgccgccgcgggctccttgcggcagaaaaatgtcgaagacgtccgccgccgccga
ctgcgcatgatctgccacggcatcggcgcccgggagggctttcaccccaccacccagcac
caggcctaccaggccctgcgggcgtggggcctgcccgtctccgactacacccgccaggtg
cactccgtcgaggaagtccaggagcaggtggcctactgggcacagcaccgccacgacgcc
ctccatgagatggacgggctggtgatcaaggtcgatgacatagccgagcaacgcaaactc
ggcgccaccagccgggcgccacgctgggcgattgcctacaagtacccacccgaggaggtg
accacccagctgctggacatccgggtgggcgtgggccgcaccggccgggtcaccccgttc
gcggtcatggaacccgtcctggtcgccgggtccaccgtcgccatggccaccctgcacaac
cagaccgaggtggcccgcaagggcgtgctcatcggggatacggtggtcatccgcaaggcc
ggagaagttatcccggaggtcctcggccccgtggcggagcgccgcgacggcaccgagcgc
gcgttcgtctttcccgccctgtgccccgtatgcggcacccgcctagccccccagaaggaa
gacgacgccgactggcgctgccccaaccatcgctcctgccccgcgcagctgaccgcccgg
ctgacctacctggccgggcgcggcgcctttgacatcgaggcgctaggggagaagggtgcg
cgggacctcatcgcttccggggtgctcaaggacgaagccaccctttttgacctcaccgag
gaagacctgaaggccaccgcggtctataccaccaagaaaaagacggtcaacgcgggcggt
cggtcgctcatccgcaacctcgagcaggcccgccacgcgcagctgtggcgcgtcatcgtg
gcactgtccatccggcacgtgggccccaccgccgcccgcgcgctcgccgcacacttccac
tccctgcctgcgcttgccgacgcccccgcggacgagctcgcggacatcgacggcgtcggc
acgatcatcgcccagtccgtggtggactggttcgccgtggactggcaccgcggcatcgtt
gcagcgtgggcgcgcgccggggtgaccatggaagaagacgccccagagggtaaagagctc
acccttgacggcttgaccgtggtggtcaccggaacgctggagggattcacccgggacggg
gcgaaggaggccattgccagccgcggcggcaaggccgcaggttcggtgtccaagaagacg
gactacgtggtcgccggccccggcgccgggtccaaggccgccaaggccgagcagctgggg
gtgcccatccttacagaggcggagtttgtggccctgctggctggtgagttaggacaggat
ggcgccgcagacggtagctag
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