Corynebacterium variabile: CVAR_1805
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Entry
CVAR_1805 CDS
T01594
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cva
Corynebacterium variabile
Pathway
cva03030
DNA replication
cva03410
Base excision repair
cva03420
Nucleotide excision repair
cva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVAR_1805 (lig)
03410 Base excision repair
CVAR_1805 (lig)
03420 Nucleotide excision repair
CVAR_1805 (lig)
03430 Mismatch repair
CVAR_1805 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cva03032
]
CVAR_1805 (lig)
03400 DNA repair and recombination proteins [BR:
cva03400
]
CVAR_1805 (lig)
Enzymes [BR:
cva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CVAR_1805 (lig)
DNA replication proteins [BR:
cva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CVAR_1805 (lig)
DNA repair and recombination proteins [BR:
cva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CVAR_1805 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CVAR_1805 (lig)
MMR (mismatch excision repair)
DNA ligase
CVAR_1805 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CVAR_1805 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AEK37157
UniProt:
G0HEU5
LinkDB
All DBs
Position
2075242..2077614
Genome browser
AA seq
790 aa
AA seq
DB search
MWCVVHLVQHVQRYVSPRKQSTAFRAVTPGRMTPPSSPRRAQLTGTAGSVVFSGDTTTPG
RCDPDHPGPEYSDMELISKQKHHRTASPVRIRVRTTLNRVSEPKQTTSPTASPDDPAERW
SALAAEIRHHRDLYYYREPVITDAEFDTMMRELQSLEAEHPEVVTGPSPTTEVAQPPVNS
PFRNVAHREQMLSLDNVFDGGELKEWLDRTPSETYLTELKIDGASIDLLYLDGRLETALT
RGDGVTGEDITHNARTISDIPDRLSGTEEFPVPAVVEIRGEIFITVEDFATMNADRQAEG
KKMFANPRNAAAGAMRQKNPAETAKRPLKLICHGLGAREGFEPASQHDAYRAIEAWGLPV
SPYTKQVHSAEEVIAQVGYWGEHRHDATHEMDGLVVKVDSLDEQEDLGATSRAPRWAIAY
KYPPEEAMTTVESIRIGMGRTGRATPFAVMSPTPVAGSTVSMATLHNPTEAHRKGIRLGD
RVMIRKAGEVIPEVLGPVEDVRDGSEREFVFSSVCPECGTPLAPTKEGDADWRCPNTRYC
PGQLQNRLNYLAGRGAFDIDALGERAASDLIASGVLPDEGRLFSLSADDLTSTNAYTTKA
GKLNRPGELLLDNLEEAKQVDLWRVITALSIRHVGPTAAKALAATLQSIPAIDKASVEEM
AEIDGVGGIIAQSVKDWFAVDWHREIVDAWADAGVRMEQIVEASDLPEQTLAGLTVVVTG
SLENFDRTSAKEAVESRGGKAAGSVSKNTDFLVAGEKAGSKLTKAEDLGVPVLDEAGFEK
LLAEGPDAVR
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgtggtgcgtggtgcatctggtgcaacacgtccaacgctatgtttcgccgcggaagcag
tccacggctttccgggccgtcacccccggccggatgacacccccgtcgtccccacgcagg
gcacagctcacagggaccgcaggttcagttgttttcagcggagataccaccacccccggc
cggtgtgatccagatcatccgggccccgaatatagtgatatggaactcatatcgaagcag
aaacatcatcgcacggcgtccccggtgcgcatccgcgtccgcactacactgaaccgggtg
agcgagccgaagcagacgacgtcccccaccgcatcccccgacgacccggccgagcgctgg
tccgccctggccgcggagatccgtcaccaccgtgacctctactactaccgcgagccggtg
atcacggacgctgagttcgacacgatgatgcgcgaactccagtccctggaggccgagcac
ccggaggtcgtcaccggaccgagcccgaccaccgaggtcgcacagcccccggtgaactcg
ccgttccgcaatgtcgcccaccgtgagcagatgctcagcctcgacaatgtcttcgacggc
ggcgagctcaaggagtggctcgaccgcaccccctcggagacctacctcaccgagctgaag
atcgacggcgcctccatcgacctgctctacctggacggtcgcctggagaccgccctgacc
cgcggcgacggcgtgaccggtgaagacatcacccacaacgcccgcaccatctccgacatc
cccgaccggctcagcggcaccgaggagttcccggtgcccgcggtcgtcgagatccgcggc
gagatcttcatcaccgtcgaggacttcgcgacgatgaacgccgaccggcaggccgaaggc
aagaagatgttcgccaacccgcgcaatgccgcggccggggcaatgcggcagaagaatccg
gcagagacggcgaagcgtcccctcaaactgatctgtcacggcctcggcgcccgtgagggc
ttcgagccggccagccaacatgacgcctaccgcgcaatcgaggcgtggggcctgccggtc
agcccgtacacgaagcaggtgcactcggccgaggaggtcatcgcccaggtcgggtactgg
ggcgagcaccggcatgacgccacccacgagatggacggcctggtcgtcaaggtcgacagc
ctcgacgagcaggaggacctgggcgcgaccagccgggccccacgctgggcgatcgcctac
aaatacccgccggaggaggcgatgaccacggtggagtccatccggatcggaatgggccgc
accggccgcgccaccccgttcgcggtcatgtccccgacccccgtcgccgggtccacggtc
tccatggccacactgcacaatccgaccgaggcgcaccgcaagggcatccggctgggtgac
cgggtgatgatccgcaaggccggcgaggtgatccccgaggtcctgggcccggtggaggat
gtccgcgacggctccgagcgcgagttcgtcttctcctcggtctgcccggaatgcggcact
cccctggcaccgaccaaggagggggacgccgactggcgctgcccgaacacccgctactgc
cccggccaactgcagaaccggctgaactacctggccggacgcggcgccttcgacatcgac
gccctcggcgagcgcgccgccagtgacctcatcgcctccggcgtcctgcccgatgaagga
cgcctgttctcgctcagcgccgacgacctgacctccaccaacgcgtacacgaccaaggcc
gggaaactgaacaggcccggtgaactgctgctcgacaatttggaggaggccaagcaggtc
gacctgtggcgggtgatcactgcactgtcgatcaggcatgtcgggccgaccgcggcaaag
gctctggccgcgacactgcagtccatccccgcgatcgacaaggcctcggtcgaggagatg
gccgagatcgacggagtcggcgggatcatcgcgcagtcggtgaaggactggttcgccgtc
gactggcaccgcgagatcgtggacgcctgggcggacgccggggtgcgtatggagcagatc
gtcgaggcctccgacctgccggagcagacgctggccgggctgaccgtggtggtcaccgga
tccctggagaacttcgaccggaccagcgcgaaggaggccgtcgagtcccgcggtggcaag
gcggcggggtcggtgtcgaagaacaccgatttcctcgtcgccggcgagaaggccggttcg
aagctcaccaaggccgaggatctcggcgtccccgtcctcgacgaggccgggttcgagaag
ctgcttgccgaggggccggacgcggtgcggtag
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