Congregibacter variabilis: R0135_02180
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Entry
R0135_02180 CDS
T10777
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cvb Congregibacter variabilis
Pathway
cvb03030
DNA replication
cvb03410
Base excision repair
cvb03420
Nucleotide excision repair
cvb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R0135_02180 (ligA)
03410 Base excision repair
R0135_02180 (ligA)
03420 Nucleotide excision repair
R0135_02180 (ligA)
03430 Mismatch repair
R0135_02180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvb03032
]
R0135_02180 (ligA)
03400 DNA repair and recombination proteins [BR:
cvb03400
]
R0135_02180 (ligA)
Enzymes [BR:
cvb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R0135_02180 (ligA)
DNA replication proteins [BR:
cvb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R0135_02180 (ligA)
DNA repair and recombination proteins [BR:
cvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R0135_02180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R0135_02180 (ligA)
MMR (mismatch excision repair)
DNA ligase
R0135_02180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R0135_02180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
AphA_like
Motif
Other DBs
NCBI-ProteinID:
WOJ93991
UniProt:
A0ABZ0I7E8
LinkDB
All DBs
Position
481931..483958
Genome browser
AA seq
675 aa
AA seq
DB search
MSQPDDVQAKVEALRAQLERWSHQYYVLDDPKVPDQDYDKALRELQELEAQYPELKDPSS
PTQRVGAAPLGAFESVAHPMPMLSLDNAFSDEELSAFLQRVVDRLDVETLPELVAEPKLD
GIAVSLIYRQGVLARAATRGDGTHGEDITLNVRTIGSVPLKLRGDKWPELVEIRGEIFMP
RAGFEAFNEQARRDGEKPFVNPRNAAAGSLRQLDSRITARRPLAFCAYASGQHPEDDWPK
SHWDVLQLFCSWGVPISRYAERLSSLEDCVDYYQRLGEQRDSLSFDIDGIVYKVNDFEAQ
RKLGFVARAPRWSIARKFPAQEAVTRVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNAT
LHNMDEIGRLELHHGDTVVVRRAGDVIPQVVSVIEERRSAGATRIEAPNACPVCASGVER
VAGEATLRCSGGLGCPAQLKAAIRHFASRRAMDIDGLGEKLIEQMVDAGLVRDVSDLFKL
EPEALLKLDRVGQKSAAKLLRAIESSRKTTLPRFVFALGIREVGEATALALAKHFGSIEA
IASADLDSLLEVPDVGPVVAEHLLAFFSSHANQQVLERLLGAGVVWPVIATTEDVSGPLE
GQTWVVSGKLESQSREEAEETLRSLGARTAKSVSAKTSVLLAGPGAGSKLTKAQSLGIEI
IDEQDFLARVAEASG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagcccgacgatgtccaagccaaggttgaggctctgcgtgctcagcttgagcgc
tggagccatcagtactacgttctggatgatcctaaggtccctgatcaggactacgacaaa
gcgctccgagagttgcaggagctcgaagcccaatatcctgagctcaaggatccttcttct
ccgacacaacgtgtgggcgcggctcctcttggtgcctttgaaagcgtggcgcatccgatg
ccaatgctgtcattggacaatgcgtttagcgacgaggagcttagtgcttttttacaacgt
gttgttgaccgactggatgtagagacgctcccggagttagtagcggagcccaagcttgac
gggatcgcggtgagtttgatctaccgtcaaggggttcttgcgcgagctgccacccgcggg
gatggtacccacggagaagacatcacccttaacgtgcgcactattggttcagttcccttg
aaacttcggggagataagtggcccgagctggtggaaattcgcggtgaaatattcatgcct
cgagcggggtttgaggctttcaatgagcaagcacggcgtgatggcgagaaaccctttgta
aatccacggaatgcggctgctggctctttgcgtcagctggattctcgaattacggcgcgg
agacctttggcgttctgtgcctatgcatcgggtcagcatcccgaggatgattggcccaaa
tcccactgggatgtgctgcaactcttttgttcctggggggttcccatcagtcgttacgca
gaacggctgtccagtttggaagactgcgttgattactaccaacgtctgggtgagcaacgc
gatagcttgagttttgatatcgacgggatcgtgtacaaagtaaatgactttgaggcgcag
cgtaagctgggtttcgttgcgcgtgcgccgcgctggtctattgccagaaagtttcctgct
caggaggcggttaccagggtgacaggggtagagtttcaggtggggcgaacgggtgcaatt
acaccggtagccagacttgagccggtgtttgtcggcggcgttaccgtaagtaatgcgact
ttgcacaacatggatgaaatagggcgtttggagctccatcacggcgataccgtggtagtg
cggcgggcgggtgatgtaattcctcaggttgtttcggtgattgaggagcgacggtctgcg
ggtgctacgcgcatcgaggcgccaaacgcttgcccggtatgcgcgtccggggttgagcgt
gttgcaggcgaggccacgttgcgctgttccggcggcttggggtgtccggcacaactcaaa
gcggccatacgacattttgcaagtcgtcgagcgatggatatcgatggtctcggagagaag
ctgatcgagcagatggtggatgctgggctggtgcgggacgtttcagacctgttcaagctg
gagcctgaggcgcttcttaagcttgatcgtgtgggacaaaaatccgcagcgaagctgctg
agggcgattgaatccagtcgcaagaccacgcttccgcgatttgtgtttgcgctgggcatt
cgtgaggttggtgaagctacggctctggcgctcgcaaagcatttcggcagcatcgaggcc
atagcgtctgcggacctcgatagtctcttggaagtgccggacgtaggccctgttgttgca
gagcacctgcttgcgttttttagctctcatgccaatcagcaggtacttgagcgacttttg
ggcgcaggcgtggtgtggccggtaattgctactacagaggatgtgtcgggaccgctggag
ggtcagacctgggtcgtaagcggaaaacttgagagccaatcccgtgaggaagccgaagag
acgcttcgaagtcttggggcgcgcactgccaagtccgtatcggccaagaccagtgttttg
ctagctggccccggtgctgggagcaaactgacgaaggctcagtctctgggcatcgaaatt
attgacgagcaggactttctggcccgtgttgcggaggcctcagggtga
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