Cebidichthys violaceus (monkeyface prickleback): 137871901
Help
Entry
137871901 CDS
T10484
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Brite
Chromosome and associated proteins [BR:
cve03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
137871901 (smchd1)
DNA repair and recombination proteins [BR:
cve03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
137871901 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
137871901
NCBI-ProteinID:
XP_068566072
LinkDB
All DBs
Position
Unknown
AA seq
1979 aa
AA seq
DB search
MEDRRDDRKIRVYDCRSGNKEKITYKSLEISGLDFNAFLQLLHQKFSIRPHETFVVVTTD
RIVLDFDQFKELQDDSTLHLLQREDQALAMATEERIKFMPHYDTLIKGGMYEYYASEGQK
SLPYALAELIDNSLSATAKNTGSRTIEIRMVFDETLGKPAVVVLDNGCGMSSKQLQNWAV
YRLSKFSRKTVTVGGKQEGYVRPDPVPRSLNSDISYFGVGGKQAVFYIGNSTRMITKPLG
SPDVHELVLSKEEFERRERDKEEIYSSVIKNRKPGDSSHVNKDEERGLHALIAEESGKES
FTAVVITGVLPEHIAFLKQDFLVWTRQLAHIYHYYIHGVNGKDMSSCSTGSDHLSKIDIQ
ITLREKPPKCPHAMNLREVDNDMQTLYINAAVDTFEFKAVTGGGGAVEGVIRYHPFLYDK
ETYPEDSGITQKYELCFMKYDGCMSHFGPFFCLSASDDEDDVDNESAARHQARGKRPIFD
CFWNGRLIPYTKVAEFDWCTPNKGAKELAECYSRISGVLFSDDRFEVTTNKLTFMDLEMK
LKHTDTLFTRIVNSQKQRGNIQKEFTQWLKNCHEKWDKQVKFSGYLETIARTDLSKKMQS
PWATFSSIEWDGKIYKTGQLVKSHKTVPILFGRVVRFLLYGKYEDGVFATGGEVEVVLEP
KAFYDKVKIIAISKIDKTATDEAIKTNIDNDFAKLPELLKVEWPEGNPWPQNAARPAGTR
FGPLKVAIVNKKGESLSKMPSVGQGAGKKLVVELKVVHHGPKGDDTVLFLSAQHSPKWGF
WFKQNDNLTSLGRYTLSLNTKINETNATEFGGKELPSYKLKFTINAGGAESFVVGAVSAT
LHVGVPFSIPLLVKDGYDHSATPPPDLKPVLKCSGLDLSYETVDISGTTFTIKSVKARGK
VLNYPQSKTYDLKVTLPGLKTDTQTIKICLLPGNPHSLHVTPEDNPITVENGNPVTFNVS
VHDEAGNITAHPKQIVCCQVQGFPAVAIDCSATGAGQIVTTPIKLKIVNGEPENLKVKFQ
MPSRKKSPAVDRELKVVPSTRVSRMELCSDGNLVLINDDKIDWLAGGLLENLFYKLYDEA
GRLVPPTAEIASRIKVNWTGEVNEEDLVQGKLPALQVPKQVQQVLFYQVSYQDQSVSASF
CVVPRPDQPNRLKATLLQNTVKLGEVLPGNINLELVDQYDNLTKTLTSTCEKDMTVDAEG
LDKSAIAFVWQESSSSVLVTGVQFQSGPLGPRELCFSYRSFVKRVMVKVTAGVPAQLKLV
SGPAEPLQVLNDHGIAMPFVVQLCDEWGNPTTDQRVVVKVNSSAPALKVTTAVASQPVDA
EGKACFTIGSVSGPKGCYELEFNGSLNQKPILGSIVNLTVIPDPNKPVSLSVEYNTNAVF
PAGGRFPVFSVTVVSDEGSPMTTFNPAAASMLLSKGVRSGNTPSQTVAELKCSKPMKNEK
KDRFHFRDKEIPELVGKYTIQFSLRIDGSKVLHSNQILINVVANRPVKLGPDSQPPTPVV
SDSKTVADRTLVEKMSLKIMDSYGNPAGQDLDGKVVVSIKNFSGDGDKRLPLFEGRTDSL
TIHLVDGKAHINRLLIMENSPGENGSAYVLLFKPEVLMVPTPLAPYELPFHFYNDSESQR
KMSELSKKKDQLTTSITAHKKIFTSYSDLLRLMTSHHLDASKKEADIRNELIKRKVEIAQ
TIPDIDRVLNEKKAEVDRILNTPRRVCSIRDHFSGQQDVLGMVGHLAFVQDDDTARVISW
HIRGDMDCVITKTTAAARRIYDDTKGQQQVMGLDSVFVQPGNRPMPHMGNGHMLFDPPGN
PVYARNLLLFPHDQESCNVAFKNILGDTILIDDLDSANIYRKAVVQNKGPCPTILTRQGD
RISAKGKFGGAQNKAPPINTLQVFGAPLPQHYYTLKEHIDLLSKHRSAVEKRDQAKKERE
DHLRTMKSPEMLKQQHEIKEKMMQLKETEKQLVSTPVRPVKRGLEGAAGPSGIVPKRLK
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atggaggacagaagagacgacaggaaaatccgtgtttacgactgccgctcaggaaataaa
gagaaaattacttataaatcgctggaaataagtggtttggacttcaatgcctttcttcaa
cttctgcaccagaaattctcaatccgtccacatgagacattcgttgtggtcacaacggac
cgaatcgtcctggatttcgaccaatttaaggagcttcaggatgactccaccctccacttg
ttgcaacgggaggaccaagctctggccatggcgacggaggagcgcatcaagttcatgcct
cattacgacacgttgatcaagggcggcatgtacgagtactacgccagtgagggccagaaa
tcattgccgtacgcgcttgccgagctgatagacaactctctgtcggccacggctaaaaac
acgggatcgaggacaatagagatacggatggtgtttgatgaaactcttgggaaacctgca
gtggttgtcttggataacgggtgcgggatgagctcgaagcagctccagaactgggcggtg
tacagactctccaagttctccaggaaaacagtcacagtcggaggcaagcaagaggggtat
gttcggcctgatcccgtccctcgtagtctcaacagtgacatttcctactttggagttgga
ggaaaacaggctgttttctacatcggaaactcgaccaggatgatcacaaaaccacttggc
tccccagatgttcacgagctggttctgtcaaaggaggagtttgagagaagagagagggac
aaagaggagatttacagcagcgtcattaagaacaggaagcccggtgactcttcgcatgtg
aataaagacgaggagcgcggcctccacgccctcatcgctgaggagtctgggaaggaaagc
ttcacggccgtggtgatcacgggagtcctgccggagcatatcgcctttttgaagcaagat
tttttagtgtggaccagacagctagcccacatatatcactattacattcatggagtcaac
ggaaaggacatgagcagctgctccacgggttcggatcatctctctaaaatcgacattcag
atcactttgcgcgagaagcctcccaaatgtccccatgcgatgaatctgagggaagtcgac
aacgacatgcagaccctgtacatcaacgccgccgtggacacgttcgagttcaaggccgtc
accggaggcggaggcgcggtggagggagtcattcgctatcatcccttcctctacgacaag
gagacttacccagaagactcaggtataactcaaaaatatgaattatgcttcatgaaatat
gacggatgcatgtctcattttggtccttttttttgtttatcagcctctgatgatgaagat
gatgttgataatgaatctgcagcccggcatcaggcaagagggaagaggccgatattcgac
tgtttctggaacggacggcttataccttacaccaaagtggccgagtttgactggtgcact
cccaataaaggagcaaaggagcttgccgagtgctacagtcggatttcaggagtgcttttc
agcgacgacaggttcgaggtcaccacgaacaagctcaccttcatggacctggagatgaag
ctgaagcacacggacaccctcttcacacgcattgttaactcacagaaacaaagaggcaac
atccagaaggagttcacgcagtggctgaagaactgccacgagaagtgggacaagcaggta
aagttctcgggctacctggagaccatcgcacggacagatttgtccaagaaaatgcagtct
ccctgggcgacgttctcctccatcgagtgggacggcaaaatatacaaaacgggccaactc
gtgaagtctcacaagacggtgcccattctgtttggtcgcgtggttcgttttttgctgtat
ggaaaatatgaagacggcgtctttgccacaggaggagaggttgaagtggttctggaaccc
aaagcattttacgacaaggtcaagatcatcgccatttccaagatcgacaagaccgccact
gatgaagccatcaagaccaacattgacaatgacttcgccaagcttccagagcttctcaaa
gtggaatggccagaagggaacccctggccacagaatgccgctcgtccagccgggactcgg
tttgggccactcaaagtcgcgattgtgaacaagaagggagagtcgttgtccaagatgccg
tcagtgggccagggagcaggcaagaaactggtggttgagctcaaagtggtccatcacggt
cctaaaggagatgacacggttctctttttaagtgcccaacattcaccaaagtggggtttc
tggttcaaacaaaatgacaatctgaccagcctggggaggtacactctgtccctaaacacg
aagatcaacgaaacgaacgctaccgaatttggaggcaaagagcttccgagctacaaactc
aagttcaccatcaacgcggggggtgccgagagtttcgtcgttggcgcagtgagcgccact
cttcacgtaggagtgccgttcagcattcctctgctcgtaaaagacggctacgatcactcg
gcgacgcctcctcccgatctcaaacctgtactcaaatgcagtggcctggatctgagttac
gagaccgtggacatcagtgggaccacgttcaccatcaaaagtgtcaaagccagagggaaa
gtcctgaattacccacaatcaaagacgtatgacctgaaggtcaccctgcctggcctgaag
acagacacacagaccatcaagatctgccttcttcctggtaatccacattccctccacgtg
acgccagaagacaacccgatcacagtggagaatggaaaccccgtcacgtttaatgtcagt
gttcacgacgaggctggaaacatcactgctcaccccaaacagatcgtctgctgccaggtt
caggggtttccagcagtggcaatcgactgcagcgccacaggagccggacagattgtgacg
acgcccataaagctgaagatagtcaacggagaaccggaaaacctcaaagtgaagtttcag
atgcctagtcgtaagaagagcccggcggtggacagggagctgaaggtggtgcccagcaca
agagtctcccgcatggagctctgcagcgacgggaatctggttctgataaacgatgacaag
atagattggctggctggaggcttgctggagaacctattctataagctgtatgatgaggct
ggtagactggttcctcccactgctgaaatagcctccaggatcaaggttaactggacagga
gaggtgaacgaagaagatctggtccaggggaagctgcctgccttacaggtgcccaagcag
gtgcagcaggtgctcttctaccaggtgtcctaccaagaccagagtgtgtcggcctccttc
tgcgtagtgcctcgtccggatcaaccaaaccgactcaaagcaactctgctccaaaacacg
gtgaagctgggtgaagtccttcctggaaacatcaacttggaacttgttgaccagtacgat
aatttaaccaagacactgacctccacctgtgagaaggacatgactgtggacgctgagggg
ctggacaaatcggccatcgcctttgtttggcaggagagcagcagctctgttctggtgacg
ggggtgcagttccagtccgggcctctcggccccagagagttgtgcttcagctaccggagc
ttcgtgaaacgcgtcatggtgaaagtgacggctggagtccctgcacagctgaaactcgtc
agtgggccagcggagcctttgcaggtgctgaatgaccacggcatcgccatgccgttcgtc
gtccagctgtgtgacgagtggggaaacccaactacagaccagagggtcgtggtgaaagtg
aactcttcggccccggccctgaaggtgacgacagctgttgcttcacaacccgtagacgca
gaagggaaagcctgtttcactattggtagtgtgagcggaccaaaggggtgctatgagctt
gagtttaacggttccctgaaccagaaacccatccttggttccatagtgaatctcactgtc
atacctgatcccaacaagcctgtcagcctctcggtggagtataacaccaacgccgtgttt
cctgctggaggccgcttcccagtcttctcggtgaccgtggtgtctgatgaaggaagcccg
atgaccacttttaaccccgctgcggcgtccatgttgctgtcgaagggagtgcggtcagga
aacacgccttcacaaacggtcgctgagctgaagtgtagtaaacccatgaagaatgaaaag
aaagaccgttttcacttcagagataaagagatcccagaactggttggaaagtacaccatc
cagttttctcttcgaatagacggcagtaaagtcctgcacagtaatcagattttgattaac
gtggtggccaaccgccccgtcaaactgggacccgactctcagccgccgaccccagttgtg
tccgacagcaagaccgtcgccgaccgaaccttggtggagaagatgagtctgaagatcatg
gattcatacggaaacccagcggggcaggacctggacgggaaggtggtcgtctctataaag
aacttcagtggagacggcgacaaacgcctcccgctgttcgaaggcagaaccgacagcttg
acgatacacctggtagatggaaaggcccacatcaataggctgctcatcatggagaacagc
cccggagagaatggaagtgcatacgtcctcctcttcaaaccggaggtgttgatggttccc
acaccgctcgctccttatgagctccccttccatttctacaacgattctgagagccaacgg
aaaatgtccgagctgtccaagaagaaagatcagctcaccacttctattactgcacacaaa
aaaatctttacttcatacagtgatctccttcgtttgatgacctctcatcacctggatgca
agtaaaaaagaggctgacatcagaaatgagctgatcaagaggaaggtggaaattgcccaa
actatcccggatattgacagagtcctaaacgaaaagaaagctgaagtcgacaggatcctg
aacacacccagaagagtctgctccatccgtgatcacttcagcgggcagcaggatgtgttg
ggaatggtcggacacttggcgtttgtgcaggacgacgacactgcgagggtcatctcctgg
cacatcaggggcgacatggactgtgtcatcaccaagacgaccgcggcagcgcggaggatc
tacgacgacaccaaaggccagcagcaggtcatgggccttgacagcgtttttgtgcaaccg
ggcaacagaccgatgccacacatgggaaacggccacatgctcttcgatccccctgggaac
ccggtctacgccaggaacctcctgcttttcccccacgaccaggagagctgcaacgtcgct
tttaaaaacatcctcggagacactattctgatcgatgacctggactctgcaaacatctac
aggaaggcggtggtacagaacaaggggccgtgtcccaccatcctcaccagacagggcgac
aggatcagtgccaagggcaagttcggaggcgcccagaacaaagccccgccgatcaacacg
ttacaagtgttcggagcccccctcccccaacattactacactctaaaggaacacatagac
ctgctcagcaagcacaggtcagctgtggagaagagggatcaggcaaaaaaggaacgtgaa
gatcacttaaggaccatgaagtctcctgagatgctgaagcagcaacatgaaattaaggag
aagatgatgcagctgaaggagaccgagaaacaacttgtgtcgactccagtgagaccagtg
aaacggggtcttgaaggcgccgctgggccgtccggcatcgttccaaagagattaaagtag
DBGET
integrated database retrieval system
