Cebidichthys violaceus (monkeyface prickleback): 137879144
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Entry
137879144 CDS
T10484
Symbol
lig4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cve Cebidichthys violaceus (monkeyface prickleback)
Pathway
cve03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cve00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
137879144 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cve03400
]
137879144 (lig4)
Enzymes [BR:
cve01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
137879144 (lig4)
DNA repair and recombination proteins [BR:
cve03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
137879144 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
137879144
NCBI-ProteinID:
XP_068575845
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MYRDVVRRDVSATYSTTDFTMEGTSSSDAAGQPFVAAQVPFLHLCNTLEKIQKSKLRPEK
SKILGDFVESWRKFHSALHKDNPDTTDSFYSAMRLIVPSFERERMAYGIKESMLAKLYID
VLGLPKNGPEANKLLNYRAPTTSQGEAGDFAGMAYFVLKKRCASQGTLSIKEVNDFLDSV
AINNAGKQKDLVKKSLLHLITQSSALEQKWLIRMILKDMKLGISKETVLGVFHPDATDLY
NVNTDLNKVCRQLHSPSVSLSEVSIGLFSAFKPMLAGVANIRNVEKQMGNGPFYIQTKLD
GERIQLHKDGDVYKYFSRNAFEYTQQFGGSPLQGSLTPYIHNVFKGHVVNCILDGEMMAY
NPTTDTFMQKGSKFDIKKLMDDSELQTCFCVFDVLLVNDQKLSRETLKKRTETLQTVFAP
VKGRLHLVPKADARTMQEVVNALNDAIDGREEGIMVKDPMSIYKPDKRGEGWLKIKPEYV
DGLMDELDLLIVGGYWGKGRRGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKEL
YDLGLKLAKHWNVYRKNDPPASILCGTEKPEVYIEPCNSVILQVRAAEIVSSDMYKTNCT
LRFPRIEKIRDDKEWHQCMTLAELDQFRGKASGKLASRHLCIDGDEPQKKKRKLPAKPKK
VVGIIDHFKPQDLSGVTKETDMFEDVEFCILNGTEDRPKAELEKGVARCGGIVVQNPGRD
TYCVIAGVENVRVKNLVSSDQHDVVWASWLLDCLRRKEVVPWQPRHMIHMSPSTREHFAK
EYDGYGDSYFADTDEQQLREVFGRMSGAEESAAVNAGQAEQRYGWEDLPTSMFRPFQVYM
DCCADIGDPETAIAATCLDIRALEVRYHGGTVVQRLEEGVSHVIVSEETRLPGLRTLRRR
FREKFKIVRESWVTDSIKAGHLMDDTDYLV
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgtacagagatgtcgtccgtagagatgtctctgcaacttacagcactacagatttcacc
atggagggaacttccagcagcgatgctgcaggtcagccctttgttgctgctcaggtccct
ttccttcacctttgtaacactttagagaaaatccagaagtctaaactccgcccagagaaa
tccaagatccttggggatttcgttgagtcatggaggaagtttcactctgccctccacaaa
gacaacccagatacaaccgactctttctactcagccatgcgcctcatagtcccctccttc
gaacgagagcgaatggcgtacggcataaaagagagcatgctagcgaaactctacatcgac
gtgctgggcctcccaaagaatggcccggaagccaataaactgttgaactaccgcgctccg
actacatcccaaggagaagccggagactttgcaggcatggcgtactttgtgctgaagaaa
cggtgcgccagccaaggaaccctcagcatcaaagaagtcaatgactttctggactcggtg
gccatcaacaacgcgggcaagcagaaggatctcgtgaagaagagcctgctgcacctcatc
acccagagctcggccctcgagcagaagtggctcatcaggatgatcctgaaggacatgaag
ctcgggatcagcaaagaaaccgtcctcggtgtcttccacccggatgcgaccgacctctac
aacgtcaacacggacttgaacaaggtgtgccggcagctccacagcccctccgtgtcctta
agcgaagtctccatcggcctcttctccgctttcaagccgatgctggcgggcgtggcgaac
atccgcaacgtggagaaacagatgggaaacggccctttttacattcagaccaagctggat
ggggagcgcatacagctgcacaaagacggcgacgtgtacaagtacttcagcagaaacgct
tttgagtacacccagcagttcggagggtccccgctgcagggctccctgacgccttacatc
cacaacgtttttaaaggccacgtcgtgaactgcatcctcgacggcgagatgatggcgtac
aacccgaccacggataccttcatgcagaaagggagtaagttcgacatcaagaagctcatg
gacgactccgagctgcagacgtgcttctgcgtgtttgacgtgttgctggtcaatgaccag
aagctcagcagggaaaccctgaagaagcgcaccgagacccttcagacggttttcgcgcca
gtcaagggacggctgcacctggtgccaaaggccgacgccaggaccatgcaggaggtggtg
aacgccctgaatgacgccattgacggcagagaggaggggatcatggtgaaggatcccatg
tccatctacaaacctgacaagcggggggagggatggctgaagataaagccagagtatgtg
gacggcttgatggatgagcttgacctgctgattgtcggtgggtactgggggaaagggaga
cggggcggtatgatgtcccatttcttatgcgccgtcgcggaggctccaaagcccggcgag
aaaccgtcggttttccacactctctgccgcatcggctccggctacaccatgaaggagttg
tacgacctcggtctaaagctggccaagcactggaacgtctaccggaagaatgacccgcca
gcatccatcctgtgcggaacggagaaaccagaggtctacatcgagccctgcaactcggtc
atcctccaggtccgggcggccgaaatagtcagcagcgacatgtataaaaccaactgcacc
ctgcgcttccccaggatcgagaagatccgcgacgacaaggagtggcaccagtgcatgacc
ctggcagagctggatcagttccgcggcaaggcgtccgggaaactcgcctcgcggcacctc
tgcatcgacggcgacgaaccgcaaaagaagaagcgcaagctgccggccaaacccaagaag
gtggtcgggatcatcgaccacttcaagccccaggacctctccggggtcaccaaggagacg
gatatgtttgaggatgtggagttctgcatcctgaatggcacagaggatcgccccaaggct
gagctggagaagggcgtggccaggtgtggagggatcgtggttcaaaacccgggacgggac
acctactgcgtgattgccggggtggagaacgtgcgcgtgaagaacctggtctcgtccgac
cagcacgacgtggtgtgggcctcctggctgctggactgcctgcgccggaaggaagtggtc
ccgtggcaaccgcgccacatgatccacatgtcgccctccaccagggagcacttcgccaag
gagtacgacggctacggcgacagctactttgcagacacggacgagcagcagctgagggag
gtgttcgggcggatgagcggcgcggaggagtccgcggcggtgaacgccggccaggcggag
cagcggtacggatgggaggaccttcccaccagcatgttcagacccttccaggtttacatg
gactgctgcgccgacataggagaccccgaaaccgccatagctgccacctgtttggacatc
agggctctggaggttcgctaccatggaggtacagtggtgcagaggttagaggaaggagtc
tctcatgtcatcgtctcagaggagaccagacttccgggtttaaggactctgaggcgccgc
tttagggagaaatttaagattgtaagggagtcatgggtgacggattcaatcaaagcaggg
cacctgatggatgacacagactacttagtttga
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integrated database retrieval system
