Charadrius vociferus (killdeer): 104282208
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Entry
104282208 CDS
T08577
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104282208 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvf03000
]
104282208 (KDM2B)
04121 Ubiquitin system [BR:
cvf04121
]
104282208 (KDM2B)
03036 Chromosome and associated proteins [BR:
cvf03036
]
104282208 (KDM2B)
Enzymes [BR:
cvf01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104282208 (KDM2B)
Transcription factors [BR:
cvf03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104282208 (KDM2B)
Ubiquitin system [BR:
cvf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104282208 (KDM2B)
Chromosome and associated proteins [BR:
cvf03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104282208 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104282208 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_4
Motif
Other DBs
NCBI-GeneID:
104282208
NCBI-ProteinID:
XP_009878588
LinkDB
All DBs
Position
Unknown
AA seq
1259 aa
AA seq
DB search
MEAEKDSGRRLRSVGRTRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVHAMDGKD
FTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNTQKGVEM
SMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQHLKERQ
TDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNL
ELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSKEYQKESMLI
DAKRKRSTDSYSSDSWLDMDEESCDAHIREEKDDSLDKNSKSLVDGSSSPNSTHSEGKEG
AGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTEFELKGL
KALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVSWPKKTT
KNRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFG
GPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICNEIIHP
GCLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDN
KEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKFEKPQEPTMRKR
LKLGKEDKLLRKKRRSWKAPDDRTAMIKPLRRLKQEPEDDLPEAPPRSKDSDQSRSSSPT
AGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEP
ESENEEPKRALNNTERLHRFSKGLNGTPRELRHQLIPSLRSTPRGITRPPPSLSPPKCIQ
MERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCC
DKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLS
GCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVE
LRLAGLDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSD
CNKVTDQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgatctgttggcagaacgcgatacgat
gagaacgaggacctctcggacgtggaggaaattgtcagcatcaggagtttcaatttggaa
gagaaattaaagagtaaaatgtatcacggggatttcgtgcatgccatggacgggaaagat
tttacttttgagtatgtgcaaagagaagctctcagagttccccttatcttcagaaataag
gatggactgggaattaaaatgcctgacccggatttcaccgtcagagatgtgaagctatta
gtgggaagccgacggatagtggatgtgatggatgtgaacacgcagaaaggtgttgaaatg
agcatgtctcaatttgtgagatactatgaaacacccgaggcccagcgtgaaaaactctac
aatgtcatcagcctggagttcagtcacacaaagctggagaacattgtcaagcgtcccaat
gtggtggacttagtcgactgggtggataatatgtggccccagcatttgaaggagagacag
acggacgctaccaatgctatttcagagatgaaataccccaaagtgaaaaagtactgtttg
atgagtgtgaaaggatgcttcaccgattttcatattgattttggtggcacttcagtgtgg
tatcacgttttccgtggggggaagatcttctggttgattccgcctactctgcagaatcta
gaactttacgaagaatgggttctctcaggaaaacaaagtgatatctttctgggagacagg
gtggaacgatgccaaagaattgagctgaaacaaggctatacgttcttcattccttcaggg
tggatacatgcggtttatactccagtagattctctggtgtttggtggaaatatcctgcat
agctttaatgttcccatgcagcttcgcatctatgaaattgaggacagaacaagggtgcat
gccaaattccgttatcctttctactatgaaatgtgctggtatgttctggagagatacgtg
tcctgtgtgacccagcgctgccacctcagcaaagagtaccagaaagaatcaatgttaatt
gatgcaaaaagaaaacgcagcacagacagctattcatcagattcgtggttagacatggac
gaagaatcttgtgatgcccatatccgggaggagaaggatgacagcttggataagaactcc
aaatccttggtggatggctcctcctcacccaacagcacacactcagaagggaaggagggt
gcaggaagaaaacaaaaagccacagtaatgagatacctaaaaagaactttgtctaatgag
tcagatgacagtgtaaaatcaacgacccccacggactatcccaaaacaccaacggggtct
ccagctacagaagtttcaaccaaatggactcacctcacagaatttgaactgaagggttta
aaagccctggtggaaaaacttgaatctctcccagagaacaagaagtgtgttccagaaggc
attgaagatccgcaggctctcctagaggacatgaagaacatactgaaggaacatgctgat
gatgaccaaaatcttgccatttcgggtgtccctgtggtcagctggcccaagaagaccaca
aagaacagggcagttggacggcccaaagggaaactgggcactgcttctgcagtaaagctc
gcagctaatcggacaactgctggagcacgtcggaggaggacgcgatgccgcaagtgcgag
gcgtgtctgcggacagagtgcggcgagtgtcacttctgcaaagacatgaagaaatttgga
ggacctggcaggatgaaacagtcctgcattatgaggcagtgtatcgcaccggtgttgcct
catactgctgtgtgtctggtgtgcggagaagctgggaaggaggacactgtggaagaggag
gagagcaagtttaatctcatgctaatggaatgctccatttgtaatgaaataatacaccca
ggatgccttaaggtgaaggaatcggatggtgtggttaatgatgagctgccgaactgctgg
gagtgtccaaagtgcaaccatgcagggaaaactggaaaacaaaagcgcggaccaggattc
aaatacgcatcaaatctcccaggctcattgctgaaagaacagaaaatgaacagagacaat
aaggaagtaacagatgctgcaaaacggaaaggggattgtgaagaaactcccaggcggaaa
tcggaggaacattccaaaaagactcaagttgactcaatactgaggagaaagtcagacgaa
gtgcatctgtggaggaaaaggaaatttgagaaaccccaggaacccactatgagaaagcgg
ctaaaacttggaaaagaagacaaactcttgaggaagaagcggcgatcgtggaaggctcca
gatgaccgaactgccatgatcaaacccctgcggcgactcaagcaagagccagaggatgac
ctgccagaagcacctcccaggtccaaggatagtgaccagtcacggtccagctcgcccact
gcaggccccagcacggagggcgccgagcccagggacaagaagaagttcaagatgaggcgg
aaaaggcggcttcccaataaagaactgagcaaggagctcagcaaggagctcaaccaggag
atccaaaaaaccgagaacagccttgccaatgagaatcaccaacccatcaaatctgaacct
gagagcgagaatgaggaacctaagcgtgctttgaacaacactgagagactccataggttc
agcaaagggttaaacgggactccccgggagctgaggcaccagctcatccccagcctgcga
agcacacctcggggaataacccggccaccgccttcgctctctcctcccaaatgcattcag
atggagcggcacgttatccggccacctcccatcagcccccctccggactcgctccccctg
gatgacggggcagcccacgtgatgcagagggaagtctggatggctgtctttagctacctc
agtcatagagacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgt
gacaaaagattatggaccaaaatagatttaaaccattgtaaatccatcactccacttatg
cttagtggcattattaggagacagcctgtaacccttgatcttagctggacaaatatatct
aaaaagcagctgagttggcttatcaacagactgccaggtcttcgagacctgctgttatca
gggtgctcatggatagcagtgtcggcactttgtagttccagttgtcctttactccgaact
ctggatgtgcagtgggcagaaggcctgaaagacgcacaaatgagagacctcttgtcgcca
cccacagataaccggccaggtcagatcgacaaccggagtaaactacggaacatcgttgag
ctgcgtttggctggcctggatattacagatgcttctttgcggctgattataaggcacatg
cctctgctctccaaactcaatctaagttactgtaatcatgtgacagatcagtctattaac
ctgctgaccgcggttggaaccaccacacgggattcattaacagaaattaatttatcagac
tgcaataaggttactgaccagtgcctgtcttacttcaaacgttgtggaaacatctgccag
atcgacctgaggtactgcaagcaagtgacaaaagaaggctgcgagcagttcatagcggaa
atgtcagtaagtgttcagtttgggcaagtggaagaaaaacttctgcaaaaactgagttag
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