Charadrius vociferus (killdeer): 104283314 Help Entry 104283314         CDS       T08577                                  Symbol PCDH15 Name (RefSeq) protocadherin-15 isoform X1   KO K16500   protocadherin-15 Organism cvf  Charadrius vociferus (killdeer) Pathway cvf04519   Cadherin signaling Brite KEGG Orthology (KO) [BR:cvf00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04519 Cadherin signaling     104283314 (PCDH15)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:cvf03037]     104283314 (PCDH15)    04515 Cell adhesion molecules [BR:cvf04515]     104283314 (PCDH15) Cilium and associated proteins [BR:cvf03037]  Primary cilia and associated proteins   USH complex and associated proteins    104283314 (PCDH15) Cell adhesion molecules [BR:cvf04515]  Cadherins   Protocadherins    104283314 (PCDH15) SSDB OrthologParalogGFIT Motif Pfam:  Cadherin ECD PCDH15_12th Ig_Cad99C_N Cadherin_FAT4_N Cadherin_CELSR2_9th Ig_CLSTN RET_CLD1 Fibulin_C CDH23_a-b Ig_BT4661_3rd Rv2386A SelP_N Motif Other DBs NCBI-GeneID:  104283314 NCBI-ProteinID:  XP_009879778 LinkDB All DBs Position Unknown AA seq 1903 aa AA seqDB search MLQRFCLWKWLAVGTAVATLLAGGLAQNDEDCKLARTGPPATIVPIDEESRNGTILVDNM LIKGTAGGPDPTIELSLKDNVDYWVILDPISQRLYLNSTGRVLDRDPPMSIQSIVVQVQC VNKKVGTIINHEVRIVVRDRNDNSPQFQQQRYYVAVNELTPVGTTIFTGFSGNNGATDID DGPNGQIEYVIQYNPNDKTSNRTFDIPLTLSGAVVLRERLNYEEKTRYFVIVQANDRAQN LNERRTSTTTLTVDVLDGDDLGPMFLPCVLVNNTRDCRPLTYQASLPELTDPARVNPISV TPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDYPQYFHMNLTTAVLTLLKPINRDLHQK FDLVIKAEQDNGHPLPAFANLHIEVLDENNQKPYFTRSTYEGFILESSPVGTTISDNQNL TSPLQIVVLDNDVEETKDPQLHLFLNDYNTFFTVTQSGITRYLTLLQPVDREVQQLYTFS MTASDGVQESAPVTFNIVVIDANDNSPTFSNISYNVKIYTDMRPGEGVIKLTAVDADEGP NGQIVYEILAGDQGDFIINDRTGLITIAPGVVLSVGRSYALTVKASDSAPPAQRRSSITT VYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAVLLNLQAFDREGDPIRYLIQNGDPQQV FNLSQSSGLLALGKPLDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNGPVFDMF LPKNLSVQEEEANAFVGQVRATDPDAGVNGQVHYSLANFNNLFRITSNGSIYTAVKLNRE VRDYYELIVEATDGAVDPRRSTLTLAIKVLDIDDNSPVFTNASYTVCVPENLPPGTVFLQ IEAKDVDLGSDVNYRIRTQEALQYFALNKYTGELSLLKSLDYESFADTEATFTFLVEAFD SKGTMPPGLATVTVRVKDMNDYSPVFSKKLYRGMVAPDAVKGTVITTVSAEDQDPPGTPA SRVRYKVDVVQFPYSASIFDVEENSGRVVTRVNLNEEPSTVFKLVVIAYDDGDPVKFNTT TVEIAVLQPSVIPRFTQDEYRPPPVSENAPKGTVVAVVTAAALNQTIVYSIVSGNEEDVF AINNRTGVISVKKSLDYESVKSYELRVQADSLQVVRSNLRVPSKSNTAKVFIEVKDENDH VPVFTKKMYIGGVSEDAKMFSSVLKVKADDKDTGNYSAMQYRLIIPPIKDGKEGFVIEAY TGLIKTAMLFKNMRRSYFKFQVIATDNYGKGLSSKAEVLVSVVNQLDMQVIVSNVPPTLV EQNKDQLIGILERYVQDQIPGATVVVESIGARRFGDGYSEEDYTKSDLMVYAIDPQTNRA IMRNELFKFLDGKLLDINKEFQPYLGQGGRILEIRTPDVVANVKKQAQAVGYTEGALLAL AVIIILCCMPAILIVMVSYRQRQAECAKTARIQMALPAGKPASTAANNLYEELGDSTILF LLYHFQQSRGKKSVLEEGDRQRVISSFASRAIEAHKQSNINGSLNNNLPKSSSNITFLSD ENPLTTQNPLYVEGVTQSPAAAEFLRKRNDTLDTLSPSTLVLRDASLGGSHRAWTVPTHI TKRHAPGSLSRPVIMDPIQWQQERLKAENEGTENQHSSVDISSPLFQKISGPKLTVKEKA RQFEQQALQEIKQVKSPDVKSIRSPTHSIRFQEGENVLEQSPKSVVASPCLRSSPLSSPT PCAEVVEPEASVVPAVIITHHDYPEELSPPPTRKPTPPSFRIKKSVCQSFLAPHTKEVIE SIPDPPKIPPPPPPLLPPPPPPPLPSPPVLPPHPPPLPTVSLSSSSSPLTTRHLSPAKHS KSPAKQPAVPPLATVPDPPPRRELKGILKNIQNLAAIEKSVANMYSQIDKNHVLPKHVSK LKPVATPELPTPEAAAEHNQQNGNLSCVVEELEKRFPSQSTAL NT seq 5712 nt NT seq  +upstreamnt  +downstreamnt atgttacagcggttttgtctctggaaatggttagctgtaggaactgcagttgctactctc ctagcaggtggtttggcccagaatgatgaagattgcaaattggccagaacaggtccaccg gctacaatagtccctattgatgaagaaagtcggaacggcactatcctggttgacaatatg ctgatcaaagggaccgcaggagggccagaccccaccattgaactctccttaaaggacaac gtagattactgggtgatcctcgatcctatcagccagaggttatacctgaatagcactggc cgagttctggacagagatccaccaatgtccattcagtccatcgtggtgcaagtccagtgc gttaacaaaaaggttggcaccataatcaaccatgaagtgcggatcgtggtgagagaccgg aacgataactcacctcagttccagcagcagcgatactacgtggcagtaaatgagttaact ccagttggaacaaccatctttacaggattttctggaaacaatggtgctactgacattgat gatggtccgaatggccaaatagagtatgtcatccagtacaatcctaatgacaagacttcc aacaggacctttgacattcctctcactttgtctggagcagtagttctacgggaaagacta aactatgaagaaaagacgcgttattttgtcattgttcaagcaaatgaccgagcccaaaat cttaatgaacgaaggacaagtacaaccaccctgacagtagatgtgctcgatggggacgat ttgggaccaatgtttcttccctgtgtcttggtgaataatactcgtgactgtagacctctc acctaccaagcgagcttgccagaactgactgatcctgcacgtgtgaatcccatcagtgtc actccacccatacaagccatagatcaggatcgaaacatccagcctccttccgatcgaccg ggcatcctctattccatcctagttggtactcctgaggattatccacagtatttccatatg aatctcacaacagctgtactcacgctcctaaagccaataaacagagatttgcaccagaag tttgacctggttattaaggctgaacaagacaacggccatcctctacctgcctttgccaat ctgcatatcgaagtccttgatgagaacaatcagaagccttacttcacaagatctacgtat gagggtttcatcctggaatcctctccagtgggaacaaccatctctgataaccagaatctg acttctccgctacaaatcgtagtgttggacaacgatgtggaggagaccaaggatccccag ctccatctctttctgaatgattacaatacgtttttcactgtgactcagagtggcatcacc cgctacctcaccctgctgcagcccgttgacagggaagtccagcagctttacaccttctcg atgacggcttctgatggtgtacaggagagtgccccagtgacattcaatattgtggtgatt gatgcaaatgataattctccaaccttctccaacatatcatacaatgtcaagatctataca gatatgaggcctggagaaggtgttataaagctcaccgctgtagatgcggacgagggaccc aatggacagatagtatatgaaattttggctggggatcagggagacttcatcatcaatgac cgaacaggccttatcaccattgctccaggagttgtattgtcagtggggcgatcctatgct ctcactgtcaaagcatctgatagtgctcctcctgcgcagagaaggagctctataactact gtttacattgaggtccttccacccaacaaccagagccctccccgctttccccagctgatg tacagccttgaagtcagcgaggccatgagaattggagccgttttgttaaacctgcaggct tttgatagagagggtgaccctataagatacctcattcagaatggagatcctcaacaagtt tttaatctctctcaaagttctggactgctagccttaggaaagcccttggacagagaaagc actgatcgctatattctgattgttacagcctcggatggcagaccagatgggacctcaact gctactgttaatatagtggtgacggatgtcaatgacaacggaccagtttttgatatgttt ctacctaaaaacctgtctgtacaggaagaggaagccaatgcttttgtcggtcaagtaagg gcgactgacccagatgctggcgttaacggtcaagttcattacagtttggcaaacttcaac aatcttttccgaatcacgtcaaacggtagcatttatacagcggttaaactgaacagagaa gtaagggactattacgaacttattgttgaagcaacagacggagctgtggacccccgccgt tcgacgctaactttagccatcaaggtgctggatattgatgacaacagccctgtctttact aatgcttcctacactgtctgcgtgccagaaaatctaccgccaggcactgtgttcctgcaa atagaggcaaaggatgttgatcttggttctgatgttaactatcgaatacggacacaggaa gcgctacagtattttgcactgaacaaatacacaggcgagttatcgcttttgaagtctttg gattatgaatcatttgctgacacagaagcaaccttcacctttcttgtggaagccttcgat agcaagggcaccatgcctcctggtctcgctactgtcacagtgagagtaaaggatatgaac gattactctccagtatttagcaaaaagctctacaggggaatggttgctcctgatgcagtc aagggcaccgttatcactaccgtttcagctgaggatcaagatcctccgggcacaccagca agtcgagtgcgatacaaagtagatgttgtccagttcccttatagtgccagcatttttgac gtggaagaaaactcaggacgtgtagtaactcgagtaaacctaaatgaagagccaagtaca gtgtttaagctagtggtcattgcgtatgatgatggggatcctgtgaagttcaacaccact actgtagaaattgctgtactgcagccttcagtaattccacggtttacgcaggatgaatac agacccccgccagtgagcgaaaacgcaccaaaaggaactgtggtcgcggttgtcacagcg gccgccttgaaccagacaattgtatattccattgtttcaggaaacgaagaggatgtgttt gctattaataacagaacaggcgtgatctcagttaaaaagtctctggattatgaaagcgtg aaaagttacgagcttcgagttcaagcagactccttacaagtggtacgatccaatctgcgc gtcccttccaaaagtaatacagccaaggtatttattgaagtgaaggatgaaaatgaccac gtgcctgtcttcaccaaaaaaatgtacatcggaggagtgtctgaagatgccaaaatgttt tcttctgtgcttaaagttaaggctgatgataaagacactgggaattacagtgccatgcaa tacagactcatcattcctccaatcaaggacggtaaagaaggttttgtgattgaagcttac acagggctaataaaaactgctatgctgttcaaaaatatgagaagatcctatttcaagttt caggtcattgcaactgacaattatggaaaaggactgagcagcaaagcagaagtacttgtc tctgtggtcaatcagttggacatgcaagtcatcgtctctaatgttcctcccacccttgtg gaacaaaacaaagatcaactcatagggattttggaacgctatgtgcaagatcagattcct ggtgcgacagtcgtggtggaatccattggcgcacggaggtttggggatgggtactctgaa gaggattacaccaagtctgacctcatggtctacgcaatcgacccgcaaacaaatagagct ataatgaggaatgaactttttaagttcctggatggcaagctgctggatatcaataaagag tttcagccgtacctggggcaagggggacgcatcctggagatccgcaccccagacgtggta gcgaacgtcaagaagcaggcacaagccgtaggctacacggaaggcgccttacttgctctg gccgtcataatcatcctttgctgtatgccagctattttaatagttatggtcagctacaga cagcgacaggctgagtgtgcaaagactgcgagaatccagatggctttaccagcaggcaaa ccagcaagcactgctgccaataacctctatgaagagcttggcgacagcaccattcttttt cttctctaccatttccaacaaagcaggggaaaaaagtcagtcttagaagaaggagaccgt cagagagttataagcagctttgcttcccgtgctattgaggctcacaagcaatctaatatc aatggatcattgaacaataatctccccaaatcttcaagtaacattacttttttatctgat gagaacccattaactactcaaaacccattatatgtggaaggtgtcactcaaagtcccgct gctgctgagtttctacggaaaagaaatgatactctagatactctttctccttcaacacta gtcttgagagatgcctctttgggaggcagtcaccgtgcgtggacggtaccaactcacatt actaagagacacgcgcctggttctctgagtaggccagttatcatggaccccattcagtgg caacaggagagactcaaagcagagaatgaaggaactgaaaatcagcatagcagtgttgat attagcagtccgctatttcaaaaaataagtggccccaagttaactgtaaaagagaaggcc agacagtttgagcagcaggctttgcaggaaataaagcaagtgaaatctcctgatgtgaaa tccatcagatcgccaacacacagcatccgtttccaagaaggagagaatgtgctagagcag tctcctaaaagtgtggttgcttctccttgccttcgctcttctcctctgtcctctccaaca ccttgtgctgaagtagttgaaccggaggcctccgtggtccccgctgtaatcatcactcac cacgactatcctgaagaactttctcctccaccaactcgcaaaccaactcctccgtctttt aggataaagaaatccgtttgccaaagttttctagctcctcacaccaaagaagttatagaa agcattccagatccacctaaaattcccccacccccacctccactgctgccacctccaccg ccaccaccacttccatcccctcctgtattgccaccgcatcctccacctctgcccacagtt tctctttcttcttcttcatctcctcttaccacccggcacctctctcctgccaagcattca aaatcccctgccaaacagccagctgtaccaccactggccacagtgccagatcctcctccc cgtagggagctgaaaggtattcttaaaaacattcagaatttagcggcgatcgaaaagtct gtggccaacatgtacagccaaatagacaaaaaccacgttctgcccaagcacgtttctaag ctcaaaccagttgcaacaccagagctgccaactccagaagctgcggctgagcacaaccag cagaatggcaacttgagctgtgttgtggaggagcttgagaaacgctttccgtctcagtcg acagcactgtaa

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