Charadrius vociferus (killdeer): 104285303
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Entry
104285303 CDS
T08577
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104285303 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cvf03041
]
104285303 (EFTUD2)
Spliceosome [BR:
cvf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104285303 (EFTUD2)
Complex C
U5 SnRNP specific factors
104285303 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
104285303
NCBI-ProteinID:
XP_009882034
LinkDB
All DBs
Position
Unknown
AA seq
947 aa
AA seq
DB search
MYDAEPLPSWLEDDDDDDDMGDHDEDHPGMEVVLHEDKKYYPTAEEVYGPEVETIVQEED
TQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCF
VDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTIVLPDTKGKSFLFNIIDT
PGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLIL
ELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVLSPLLGNVCFSSSQYSICFTLGSFAK
IYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVV
GDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGA
KTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQ
PVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATV
TEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESG
EHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKI
TMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNIL
VDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGG
GQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPG
SPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQP
APHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQDVVLNYPM
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgctgagcctctaccttcttggcttgaggacgatgacgacgatgatgatatg
ggggaccatgatgaggaccaccccgggatggaggtggtgctgcatgaggataagaaatac
tatcccaccgccgaggaggtctacgggcctgaagtagaaacgatagtacaagaggaagac
acgcagcctctcactgagcctattataaaacctgtgaaaaccaaaaaattctctttgatg
gaacagacgttaccggtcactgtctatgagatggatttcctggcagatctgatggacaac
tcggagctaattcgaaatgtgacgctgtgtgggcaccttcaccatggcaagacttgtttt
gttgactgcctgattgaacagacacacccagagatccggaagcgctacgaccaggatctt
tgctacactgatatattgttcacagagcaagagaggggagtagggatcaagagcacacca
gtgacgattgttctgccagacaccaaaggaaagtcttttctcttcaacatcatcgacact
ccaggtcacgtcaatttttccgatgaggtgacagctggcctacgtatttcggacggcgtt
gtgcttttcattgatgcggctgagggggtgatgctgaacacagagaggctgatcaagcat
gcggtgcaggaaaggctcgcggtgaccgtgtgcatcaacaagatagaccgactgatcctg
gagctgaaattgccccctacggatgcttattacaaactcagacatatcgtagatgaagtc
aatggtctgatcagcatgtattccaccgatgagaacctcgttctgtctccccttctgggg
aatgtgtgtttctccagttcacagtacagcatctgcttcacgctgggatcttttgcaaag
atttatgcagacacatatggggacatcaattatcaggagtttgcaaagcggctttggggt
gacatctacttcaacccgaagacccgcaagttcactaaaaaggccccaacgagcagttcc
cagcgcagttttgtggagttcattctggagcccctgtacaagatcttggctcaggtggtg
ggggacgtggacacgaccctgcccaggactctggatgaacttggcattcacctgaccaaa
gaggaattgaaattgaacattcggcccctcctgcggcttgtctgtaagaagttctttggg
gaattcacaggtttcgtggacatgtgtgtgcagcacatcccctccccgaaggtgggagcc
aagacgaaaattgagcatacctacactggtggcgttgactctgatctaggggaggccatg
agcgaatgcgaccctgacggtccgttgatgtgccacacaacaaaaatgtacagcacagat
gacggcgttcagttccacgcctttggcagagtgctcagtggtaccatccatgctgggcag
cctgtgaaggtccttggagaaaactataccctggaagatgaggaggactcccagatctgc
actgtcggacgcctctggatctcggttgcgaggtaccacattgaggttaaccgggttcct
gctggcaactgggtgctgatagaaggagtggaccagcccatagtgaagactgcaactgtc
acagagcctcggggcaatgaggaggctcagatcttccgtcctttgaagttcaacaccacg
tctgtcatcaaaatagctgtagagccggtcaacccctcggagctccccaaaatgttagac
ggtctccgcaaagtcaacaagagttacccctcgcttactactaaggtggaagaatcgggg
gagcacgtgatcctagggaccggggagctctacctggattgtgtgatgcacgatctgcgg
aagatgtattcagagattgacatcaaggtcgccgatccagttgtgacgttctgcgagaca
gtggtggagacgtcctccctaaagtgctttgccgagacacccaacaagaagaacaagatc
acgatgattgctgagcctctggagaagggactcgcggaggacattgaaaatgaagtggtc
cagataacgtggaacagaaagaagctgggtgaattcttccagaccaaatatgactgggat
ttactggctgcccgttccatctgggcctttgggccagacgccactggcccaaacatccta
gtagatgatacgctgccctcagaggtggacaagtcactgctgggctctgtgaaggacagc
attgtgcagggatttcagtggggaaccagggaagggcctctctgtgatgaactgatccgc
aacgtgaagtttaagatcctggatgcagtgattgctcaggagcccttgcaccggggtgga
ggacagatcatccccacggcccgcagagtggtctattccgctttcctgatggccacccct
cgcttgatggagccctactacttcgtggaggtgcaggctcctgccgactgcgtgtctgcg
gtgtacacagtcctggccaggcggagaggccacgtgacgcaagatgctccgatcccaggc
tcccctctctacaccatcaaagccttcatcccagccattgattcattcgggtttgagaca
gacttgaggacccacacgcagggacaagccttctcgctctctgttttccaccactggcag
attgtccctggtgaccccttggacaagagcattgtcatccgacccctggagccccagcca
gccccgcatctggccagagagttcatgatcaagaccaggcgtaggaagggcttgagcgag
gacgtgagcatcagcaagttcttcgatgaccccatgttgctggagctggccaagcaagac
gtcgttctcaactaccccatgtga
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