Charadrius vociferus (killdeer): 104294439
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Entry
104294439 CDS
T08577
Symbol
BRCA1
Name
(RefSeq) LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
cvf
Charadrius vociferus (killdeer)
Pathway
cvf03440
Homologous recombination
cvf03460
Fanconi anemia pathway
cvf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cvf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104294439 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
104294439 (BRCA1)
03460 Fanconi anemia pathway
104294439 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvf01009
]
104294439 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvf04121
]
104294439 (BRCA1)
03036 Chromosome and associated proteins [BR:
cvf03036
]
104294439 (BRCA1)
03400 DNA repair and recombination proteins [BR:
cvf03400
]
104294439 (BRCA1)
Enzymes [BR:
cvf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104294439 (BRCA1)
Protein phosphatases and associated proteins [BR:
cvf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104294439 (BRCA1)
Ubiquitin system [BR:
cvf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104294439 (BRCA1)
Multi subunit type E3
BRCC complex
104294439 (BRCA1)
Chromosome and associated proteins [BR:
cvf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104294439 (BRCA1)
DNA repair and recombination proteins [BR:
cvf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104294439 (BRCA1)
BRCA1-A complex
104294439 (BRCA1)
BRCA1-B complex
104294439 (BRCA1)
BRCA1-C complex
104294439 (BRCA1)
BRCA complex
104294439 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
104294439 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
BRCT_2
RING_XB3-XBAT31
zf-RING_2
BRCT_3
zf-C3HC4_3
zf-RING_6
zf-Nse
zf-RING_5
zf-MIZ
RTT107_BRCT_5
zf-ANAPC11
Zf_2nd_IFT121
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
104294439
NCBI-ProteinID:
XP_009892390
LinkDB
All DBs
Position
Unknown
AA seq
1763 aa
AA seq
DB search
MDFSVIAIGDVQNVLSAMQKNLECPICLDVVKEPVSTKCDHIFCRFCMFKLLSKKKKGVI
QCPLCKTEVTKRSLKENSRFKQLIEGLLETIRAFELDTGVKFLDSHRFPKTSTEATGAEF
LCKESSVIQSKGFRNRKKSAEENRRENCTLSLLLXITTQLTDTGIKRCPLRNKTQKCDSE
KGIYIEFGSDSSEELFKQASNTGLEDKEALQTSSQEKLEELKSAEKGNERSCTTQPDKLR
AKEIILPNVRGESDFSKEGLSKKSTQSITEYAKPGQENVTEYQSPALNVLAVDLLTEQCD
RIGNANPLRNGDTSFFKRTEKMDAEQTQCNSKSKEFDLKDSSESRLDKSKEIDIVLQSVE
TVEMYEPENDSFHGKELALEKLLQPETLHCATATLNQVSRKRLKRSIRKVNEWFSKSKEI
LSSSFSQDDSAGAADVSGEGDTSLSDKDSCISEKTDPLVDFMEIAVVEGNKRWSKQTADS
IKDKIFGKTYERERKTNPPVVLRDILPTTKKEDVTADEKSLNNSSKGGLKRKRKTARVLQ
PEDFIKKKDTEEAGGCPQRVNLCLGDSEKRRCDESSALSESHLSENRENNTLAEIEEGEE
SVWKKATEKVIGKLRDGELELNNCEQKSTKKSSSASKRCRHSARTTCALQLVVDRNSVSP
DPAERQIDSYPSSEEPRKADSEQRQVRRSRRLQLLSEEVTKETGKGVVVKGARKYDSDHE
GSFFGVQRNVLVHTSECKDLCEPQGTLSDNPLTNLKGGNLEANEIQISLKNSSDAAETGR
SLFNPTSSCQSLSCSSFAPDAGPQEGEILGSPFLLRSPSVAVVQTASHPAEEMPESCTTF
HQDSGHDKQNVPGDFTTEKLPMAKNVSELAKEAEDSELDTQYLRNIFRHSKRLSFSLYPA
PVKACAVEDATSETLKVACANQVENKHSKYLKTENLQEEKTTAESLSRICEKETLKTYES
ACVSPVTCFVGSTECMHVGEHQEGVSQAADRGNLTPVRMGTARTEDKSRSQEGEQGNEKT
VSTDIGIKSELRQNPIKRNRSQSDQSNTEEHIFKVTDLNTVDEICFSSESNEEGKAKVVD
GKGPVLRFQSSSVTPPAACQQRPTEFSCEVIGEKSSKRERKQVKGNEEQATQTASRGMTE
CLVTEALEEPLKGLSETPDGLLCSDDDIEENNSFSETDKRERSAVFVRRSDNTLVKELHN
RNVSSKPRSRGTQRPRRRAQKLQSSDEESSEDEDLPCFQTLIFGKSISTPLQINKQGTSV
VESSVSPVTLPHNGSHDDNNMPKMPEAALSNGCVSPSQESECSVNLFSSQSNVSEESADG
AQELKKPLIQVHSSKQVSNVNESKETFQSCDGGLKRSKTSFEDECQEDPNMGANLGEAYD
SETSNVEDSCGPFSQGEILTTQQKNAMQNNLKKLQQEMAVLEAVLKQHGSQDCEFLPIHR
NLPNSSSERTLGMEQRRKERENADELNSGTRLDSASVLANLSGNVTRSPNNSSSSVRLLN
PRTAEATNSSVGAQNADKSCAQECKLKKSVCFPVSVLHNASGKENATSPVVTKRKEMSIV
ASGLNQSEHLVVQKFAKKTHSTLSNRITEETTHVIMKTDKELVCERTLKYFLGIAGRKWV
VSYQWVIQSFKEGRILDEENFEVRGDVINGRNHQGPKRARQSLTEKIFKDFEICCYGPFT
DMTTEHLEWMVELCGASVVKQLHLFSDTTKSTAVVVVQPDAWMENTDYRAIQQKNNVAMV
TREWVLDSVACYECQEFDAYLVS
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcagtgattgccattggagatgtacaaaatgtgctttcagctatgcagaag
aacttggagtgcccaatatgcttggatgtggtaaaagagccagtttcaacaaaatgtgat
cacatattctgcaggttctgtatgttcaaactcctcagcaaaaagaaaaaaggcgtgata
cagtgtcctctgtgtaagactgaagttaccaagagaagtctgaaagaaaattccagattt
aagcaactaatcgagggattgttggaaactatccgtgcatttgagcttgacactggagta
aagtttttagacagtcatcgctttcctaaaacatccacagaagccactggtgctgagttc
ctgtgtaaagaaagttctgtcatccaaagtaagggcttcagaaacaggaaaaaaagtgct
gaagaaaacagacgagaaaactgcaccttgagcctactgttataaataactacacagctt
acagatactgggatcaaaaggtgtcccctaagaaacaaaacccagaaatgtgactctgaa
aaagggatttatatagagtttggttctgattcatctgaagagctttttaaacaggcaagc
aatactgggttagaagacaaagaagcacttcagacttcatctcaagaaaagctagaagaa
cttaagagtgctgagaaggggaatgaacgttcttgcacgacacagcctgacaagctgcgt
gctaaggaaataattctaccaaacgtcagaggtgaaagtgatttctcaaaggaaggcttg
agcaagaaaagtactcagagcatcactgaatatgccaaacctggtcaagagaatgtgacc
gaataccagagtcctgctttaaatgttcttgctgtagacctgctcacagagcagtgtgac
agaataggtaatgccaatcccttaaggaatggggacacatctttctttaagcgcacagaa
aagatggatgcagagcaaactcagtgcaatagtaaaagcaaagagtttgacttaaaagat
agctcagagagcagattggataaaagcaaagaaatagatattgttctacaaagcgttgaa
actgtggaaatgtatgaacctgagaatgattctttccatggaaaagaacttgctctggag
aaactacttcagccagagacacttcactgtgctactgctaccctgaatcaagtctctagg
aagagactgaagcgaagtattcggaaagtcaatgaatggttttcaaaaagcaaagagatt
ctgtcttccagtttttcccaggatgattctgctggagcagctgatgtttcaggtgaagga
gatacatctttatcagataaagactcctgtatttcagaaaagactgaccctctggtagat
ttcatggaaattgcagtggttgaaggaaataagagatggtcaaaacaaacagcagatagc
atcaaagataaaatatttgggaaaacatacgagagagagaggaagacaaatccccctgtt
gttttgagagacattttacctactacaaaaaaggaagatgtgactgctgatgagaagagc
ttgaataattccagcaaaggcgggctaaaacgaaaaaggaagactgcccgtgtcctgcaa
cctgaggatttcatcaagaaaaaagatacggaagaggcaggtgggtgccctcaaagagtt
aacttgtgccttggagattctgaaaagagaagatgtgatgaaagctctgcccttagtgag
agtcacctctctgagaacagagagaataatacactagcagaaattgaggaaggagaagaa
tccgtatggaaaaaagctactgaaaaggtgattggcaagctacgagatggggagctagaa
ctgaataactgtgaacagaaaagcactaaaaaaagtagttctgcatcaaaaaggtgcagg
cattctgctagaaccacgtgtgctctccagttagtagtggacagaaattctgtatcccct
gatccagccgaacgacagattgacagctatccaagcagcgaagagccgaggaaagctgat
tctgagcaaagacaagtcaggcgcagcaggcggcttcagttactttctgaagaagttaca
aaagaaacaggaaaaggagtagtagttaagggagcaagaaagtacgatagtgatcatgaa
gggtctttctttggagtccaaaggaatgtgttagttcacacttcagaatgcaaagacctg
tgtgagccccaggggacgttgagtgacaatccactcactaatctgaagggtggtaatcta
gaagcaaatgaaatacagattagtctaaagaattcatctgacgctgcagaaactggaaga
agtctcttcaatcctacatcttcatgtcagagtttaagttgtagttcctttgcacctgat
gcaggtcctcaagaaggtgaaatactaggtagccctttcctcctacggtctccttcagtg
gctgttgtgcaaactgcttcccacccggctgaagagatgcctgaatcatgtactactttt
caccaggatagtggacacgataaacaaaatgttccaggggacttcacaactgaaaagttg
ccaatggctaaaaatgtttcggaattggccaaggaggctgaagatagtgagttagacaca
cagtatctgcgaaatatatttcggcattcaaaacgcctatcatttagcctttatcctgct
cccgtgaaggcgtgtgcagtggaagatgctacttctgaaactttaaaggtggcatgtgct
aatcaggtagaaaataagcatagcaaatatttaaaaacagaaaacttgcaagaagagaaa
acaactgctgaaagcttgagtaggatttgtgagaaagagacgctgaagacctatgaatct
gcttgtgttagtcctgtaacttgctttgtcggcagcactgaatgtatgcacgtaggggaa
caccaagaaggtgtttcacaggctgcagatcgagggaatcttacaccagtaagaatgggt
actgctaggactgaggacaaaagcagatcgcaagaaggagagcagggaaacgaaaagaca
gtgtcaactgacatagggataaaaagcgagttgagacagaatccaatcaaaaggaacaga
agccaaagtgatcagagtaatacggaggagcacattttcaaagtaactgatttaaacaca
gtcgatgaaatatgcttcagttcagaaagcaatgaagaaggaaaggccaaagttgttgac
ggcaaaggaccagtattacgttttcagtccagttcagtgactcctcctgcagcttgtcag
caaaggcctactgaattcagctgtgaagtcattggggaaaaaagtagcaaaagagaaaga
aaacaagtaaaggggaatgaggaacaagcaacccagactgctagcagagggatgactgag
tgtttagtcacagaggctctagaagaacccctcaaaggtttgtctgaaacccctgatggc
ttactgtgctctgatgatgatattgaagagaacaacagcttttctgaaactgataagaga
gagagatctgctgtgtttgtaagaagaagtgacaataccctggtaaaagaactacacaat
agaaatgttagttctaagccaagatctcgaggtactcaaagacctcgaagaagagcgcag
aaactgcaatcttcagatgaagaatctagcgaggatgaagatttaccatgttttcagact
ttaatatttggcaaatcaataagcacacctttgcagatcaataaacaagggacatctgtg
gtagagtcttcagtaagtcctgtcacattgcctcacaatggaagtcatgatgacaataat
atgccaaaaatgcctgaagctgccctaagtaatgggtgtgtttcaccaagccaggagtca
gaatgctccgtcaacttattttcttcccagtccaatgtgtctgaagaatcagctgatgga
gcacaagagcttaagaaacctttaatacaagttcattcatccaaacaagtgagcaatgtg
aatgagagtaaagaaacttttcaaagttgtgatggagggctgaagagaagcaaaactagc
ttcgaagatgaatgccaagaagacccaaacatgggagccaacctaggtgaagcgtatgac
agtgaaacaagtaatgtagaagattcatgtgggccattctcccagggtgaaatccttact
acacagcagaagaatgctatgcaaaataacctaaaaaaacttcagcaagaaatggctgta
cttgaagcagtgctaaagcagcatggaagtcaggactgtgaatttctacctatccatagg
aatctgcccaattccagtagtgaaagaacacttggaatggaacaaaggagaaaagaaaga
gaaaacgcagatgagctgaattctgggaccaggctagacagtgcatctgtcttagcaaat
ctctctggaaatgtaaccaggagtccaaataactcttcctcatctgtaaggcttcttaac
cctcgtactgcagaagcaacaaatagttctgttggagctcagaatgctgataaaagctgt
gctcaggaatgtaaattgaagaaaagcgtgtgttttcctgtatctgttctgcacaacgca
tctgggaaagaaaacgctacaagtccagttgtgactaaaaggaaagaaatgtcgattgtg
gcatcagggctgaatcaaagcgaacatttggtggtccagaagtttgcgaaaaaaactcac
agcactttatctaatcgcattactgaagaaacaacccatgtcataatgaaaacagataag
gagctggtgtgcgaacggacactgaagtactttctgggtattgcaggaagaaaatgggta
gttagttatcagtgggtaattcagtcttttaaagaaggaaggatactggatgaggagaac
ttcgaagttagaggagatgtaatcaatgggagaaaccaccaaggtcctaagagggctaga
cagtctctgactgaaaagatctttaaagactttgagatctgttgctatggtcccttcact
gatatgactacagaacatctggaatggatggtggagctttgtggtgcctctgtagtgaag
caacttcatctgttctcagacacaacaaaatctactgctgtcgtggttgtgcagcccgat
gcttggatggaaaacacagattatagagcaatccagcaaaagaacaatgttgccatggtg
actcgagagtgggtattggacagtgttgcttgctatgagtgccaggagttcgacgcgtac
cttgtgtcctaa
DBGET
integrated database retrieval system
