Cyprinodon variegatus (sheepshead minnow): 107085383
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Entry
107085383 CDS
T06110
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvg03036
]
107085383
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107085383
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107085383
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107085383
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Enkurin
Motif
Other DBs
NCBI-GeneID:
107085383
NCBI-ProteinID:
XP_015231154
LinkDB
All DBs
Position
Unknown
AA seq
1819 aa
AA seq
DB search
MLQVNDCRFEKKVIKKTLETSNLDFNGFLQVVKKEFAVPSHETFVLTTTDRIVVDDIKFD
KVKNERTLYLLRAKDQDLPASVNEEVKFVPHYNTLTECGTNEYFTEGQKSLPCALAELVD
NALSATAKNTGLREIEIRVMFDRTFGKPAIIVLDNGCGMTSKQLNNWAVYRLSKFTRDNS
LFEGEREGYVFPDPVPLSLNSDISFFGVGGKRACFHMGNAVRMISKPVGSPDIHELVLSK
EEFQKKEQKKEDVYRGTILNRRPGDFSHITEEERFLRKIISEETGKNSFTVVVITGVSHD
HIKYLKEDFDEWTRELAHIYHYYIHGVNGNCKTDISQRSENLPRIDILVTLQASQSPRTI
NLRQVDDDMQTQYINAATDTFEFRAETMDHGIVEGVLRYHPFLYDRETYPKDPYVKQVPG
KDDYNDDDDERESTAINQARGKRDIFECYWNGRLIPYTTISDFDWCQRKRGSNLPPQCYN
RFSGVLFTDGKFMVNANKLKFMKLEKQLKTGDTIFTSGNRAQKTSKRANIQKEFTRWLQN
CHEKFDKEVRFIGYKETVTRPELETQKKQYPWAVFSSIELDGKRYDTGKTLKFQKTPQIL
YGSVINFLLYGNHQEDLFATGGEVKIKREPEGLYDEMTKVIPITKIDRTATDESIKKHIE
SERKKLPEHLKVDWPEGNPLPKNAVLLAGTPLGPLKVEILNGDKAPISSRIHTGGKGPRI
NLGVLLQVEFNDISENIKVFSITAPYSKNGYWFTKIENLRSLGKYTLTLNAVLNENGATV
YGGRELPSYVHVFTIKEGNAERFTVRLSSSQRVGVPFDINLKMEDCYGHPTKPPPQLQPE
LQCSDLNPRFETTARSENMITIKGVKVTGKLPDYQQTKVIALNFDLKVILPGLKDDTKTV
KLTLSPGNPHSLNVESNTDSVENGNPVCFMIEVHDEAGNITAKSKQEVRCQIRGLPSVIK
DCSTGKAELVSVPINREILNGEQQILQAKFDMPGQKQVKAITKELVVMPSNRICRMELFC
KSKEMLVLRNNENIDWQAGGVLENLFYKLYDEAAREVPITAEIASNIKVTWKRDIDQRDL
LMGKLPDLHVSTHVQEKHYYEVSYRDKNVSSCFKIVPCPDEPAQLKSTLTQSTLKLGETL
SGHIKLQLVDKYDNVCKKLTPMCAQLFSVEAEGLDKSEIKFKWNERGSSIGVMGIRFLSV
SPGPRVICFSYKHFTKQVILQVTPGMPFQLKLVSGPEQPLQVLNCQGIPTPFTVQLCDKW
GNPSPDKNLTVEMKPSPETLKLTHVESQPMDSEGKVCFTINNLKGSKGSYILKFKGSLNG
KSIPGPSVDLILLPDPNKPVNLSVKYDKHARFPAGGTFPDFSVTVLSEEGSQMKTFKPED
LSMSLWEKGSATQPETDIMPKCGKPIKDEENHCYRFRGEAIPKHAGEYTVEFALQSNKTE
DQLRTRINIKVVANEPIKLEPECQLETPVVFHCIDISNRILVENVTLKIMDQHGNPAGQD
LNGKVLISMKCPDGEIPRSLPLFKDKNSHVQISLKEGTVNIDVSSTLSVGHLAFVADDDA
ARVISWHLQGDMDCVITTTTQAAQKLHQKTMGNQQVMPLDSILLHQGSRCRPLPHIKHGR
ELFKPTGNPVFAKDLLIYPHKESCDPDKLTKVFKNLLGDTILMDDFNSATNYRKEVVEKG
IFCPTILTRKGDRVSGRGKFGGKNNRAPSIDQLKVFGAPLPPHYYTLKDQIDALREYQAL
VEKKEEAEKELNDHKLTTFDEMLQKDTEREKIDKELEEIEKELESVSLRPGKRASGSLES
PVILSKRPREKSMDSPERF
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaagtgaatgactgccgctttgaaaaaaaggtcatcaagaaaactttggaaacc
agtaatttggacttcaatggctttctgcaagttgtgaaaaaggaatttgctgtcccttca
catgaaacttttgttttgaccacaactgacagaatagtagtggacgatataaaatttgac
aaggtgaagaatgagaggaccctctacctactacgagcaaaagaccaagacctcccagct
tcagttaatgaggaggttaaatttgttcctcactacaacacactgactgagtgtgggaca
aatgaatacttcaccgagggccagaaatcactaccttgtgctcttgctgagctggtggac
aacgctctttcagctactgcaaaaaacactggactcagggagatagagataagggtgatg
tttgacagaacttttgggaaacctgcaataattgtcttagataatgggtgcggaatgacc
tcaaagcagctcaataactgggccgtgtacagactctctaagttcacgagggataacagc
ctgtttgaaggggaaagagaggggtatgttttccctgatcctgtacctctgagtctcaac
agtgacatatctttttttggagttggaggaaaaagagcatgtttccacatgggcaatgct
gtcagaatgatcagcaaaccagttggctctccagatattcatgagctggttctgtcgaag
gaggaatttcagaaaaaggagcagaaaaaagaggatgtttacagagggaccattctaaac
agaaggcctggtgacttctcacacataacagaggaagaacggttccttcgtaaaatcatc
agtgaagaaactggaaagaacagcttcactgtggttgtcataacaggagtttctcatgat
cacatcaaatacctgaaagaggactttgatgagtggaccagagagctagcccacatctat
cattattacattcatggagtcaatggaaactgcaaaacagacatttcacaaagatcagag
aacttgccaagaattgacattcttgtaacattgcaggcttcccagagcccacgtacgatc
aatctcagacaagtggatgatgacatgcaaacacaatacataaatgcagccacagacaca
tttgagtttagggcggaaactatggatcatggcattgttgagggtgttcttagataccat
ccatttctctatgacagagagacctatcctaaagatccatatgtcaaacaagtccctggt
aaggatgattataatgatgatgatgatgaaagggagtctaccgccataaatcaggcaagg
gggaagagggacatctttgaatgttactggaatggacgtctcatcccctacacaacgatt
tctgattttgactggtgccaaaggaaaaggggatcaaacttacctccacagtgttacaat
cgcttttctggtgtgcttttcactgacggaaaatttatggtcaacgccaacaagttaaaa
ttcatgaaacttgagaagcagctgaaaactggggatacgatttttacctctggaaatcgt
gctcagaaaacctctaaaagagccaacattcaaaaagagtttacccggtggctccaaaac
tgtcatgaaaagtttgacaaagaggtgagatttattggctataaagaaactgtgacgcga
ccagaattggagactcagaaaaagcaatatccctgggcagtgttttcctccatcgaactt
gatggcaaaagatatgatacagggaaaactctaaagtttcagaagacaccacaaattctt
tatgggtctgtgataaattttctcttgtatggaaatcatcaagaagacttgtttgccaca
ggtggagaagtgaagatcaaacgtgagcctgaaggactctatgatgagatgaccaaggtt
atacccattactaaaattgacagaactgccactgatgaaagcatcaaaaaacacattgag
tctgaaaggaagaagctaccagaacacctaaaagtggactggccagagggtaatcctttg
cctaaaaatgctgttttgcttgctgggactcctttaggacctctcaaagttgaaattcta
aatggagacaaagccccaatctcatcaagaatacatacagggggcaaggggccaaggata
aatctgggagttttgcttcaggtggagttcaatgatatatccgaaaacatcaaggttttt
agtatcaccgccccttattcaaaaaatggatactggttcacaaaaattgaaaacttgagg
agcttggggaagtacacactgactctaaatgctgtgttgaatgaaaatggtgctacggtc
tatggtggcagagagctgccaagctatgtacatgtttttacaatcaaggaaggaaatgct
gagagatttactgtgcggttaagttcctctcagcgtgtaggggtgccttttgacattaat
ctaaagatggaggattgttatggccaccccacaaaacctcctcctcaactccaacctgaa
cttcagtgcagtgatctgaatccaaggtttgagacaacagctcgtagtgagaacatgata
actatcaaaggtgtcaaagtcacaggaaaactgccagactatcaacaaaccaaggtaatt
gctttgaattttgaccttaaagtgatactgcctgggcttaaggatgatacaaagactgtc
aagcttaccctttcccctgggaatcctcattcacttaatgttgaatcaaacactgactca
gtggagaatggaaacccagtctgctttatgattgaagtccatgatgaagctggaaacatc
acagctaaatctaagcaagaagttcgctgccagattcgggggttgccatctgtgataaaa
gactgcagcacaggaaaagctgaacttgtctcagttcccattaaccgagaaatactcaat
ggagagcaacaaatactccaagctaaatttgacatgcctggccagaagcaggttaaagca
atcactaaggagctggtggtcatgcccagcaatcgtatctgtcgcatggagcttttctgt
aagagtaaggaaatgctggtcttaaggaacaatgaaaatattgattggcaagctggagga
gtgctggagaacctgttttataagctgtatgatgaggctgcaagagaggtcccaatcacg
gctgaaattgcctccaatattaaggttacatggaaaagagacattgatcagagagatttg
ctgatgggaaagctaccagatctacatgttagcactcatgtgcaggaaaagcactactac
gaggtctcctaccgggacaagaacgtatcctcctgctttaaaattgtaccttgcccagat
gaaccagcacaactaaaatccactctgactcaaagcacattaaagcttggagaaacctta
tctggacacatcaagttgcagcttgtggacaagtatgataatgtatgcaagaagctcacc
cccatgtgtgctcagttgttttctgtggaagctgagggtctggacaaatcagaaatcaaa
ttcaaatggaacgagcgcggcagctcaattggggtgatgggaattcgtttcctgtcagtg
tctcctggtcccagagtcatttgcttcagttacaaacacttcactaaacaggtcatcctc
caagtaacaccaggaatgcctttccaacttaaactggtcagcggtccggaacagccattg
caggtattgaattgtcaaggtattccaacaccatttactgtccagctatgtgataagtgg
ggaaatccttctccggacaaaaacttaactgttgagatgaaaccttcacccgagacacta
aagctgacacatgttgagtcacaacccatggactcagaagggaaagtctgcttcactatt
aataatctgaaaggttcaaaagggtcctacatactgaagtttaagggttccttaaatggc
aaatccatccctggtccatcagtggatctcattctactccctgatcccaacaaacctgtg
aacctgtcagtgaaatacgataaacatgccagattccctgctggaggcacatttccagat
ttttcagtgactgtgctctctgaagaggggagtcagatgaagacatttaaacctgaagat
ctatctatgtccctgtgggagaaagggtcggcaacacaacctgaaacagacattatgcca
aaatgcggaaaacctattaaggatgaggagaatcactgttatcgatttagaggagaagca
atcccaaaacatgcaggggagtatactgtagagtttgctctacaaagcaacaaaacagag
gatcagcttaggactcggatcaatataaaggtggtggctaatgaaccaatcaaactggaa
cccgaatgccagctagaaaccccagttgttttccactgtatagacatcagcaatcgaata
ttggttgaaaatgtgacgctaaagattatggatcagcatggtaatccagctgggcaggac
ttgaacggtaaggtgttaatctcaatgaagtgtcctgacggagaaatacccagaagtctc
cccttgtttaaagacaaaaacagccacgtccaaattagcttaaaagaaggaactgtcaat
attgatgtgagtagcactctttctgttggccacttggcttttgttgctgatgatgatgct
gcaagggttatctcctggcacctgcagggagacatggactgcgtcatcaccaccacaaca
caagcagctcagaaactccaccaaaaaacaatgggcaaccagcaggtcatgcctctcgac
agcattcttttgcaccaaggaagccgttgcagacccctgccacacataaaacatggcaga
gaactttttaaacctactgggaacccagtctttgccaaggacctgctgatttatccccac
aaagagagttgtgatccagataaactgacaaaagtgtttaaaaacctcctcggcgacacg
atcctgatggacgactttaactcagccactaactacaggaaagaggttgtggagaagggg
atattttgtcctaccatattgacccgaaagggagacagggtcagtggcaggggcaaattc
ggagggaaaaacaacagagcaccatcaattgaccagttaaaagtgtttggagctcctcta
ccaccacactactacacactgaaagatcaaatagatgcgcttcgtgagtaccaagcacta
gtggagaaaaaagaagaagcagaaaaggagcttaatgaccacaagttaacaactttcgat
gaaatgctccaaaaagacacggagagagagaaaatcgataaggagctagaagagattgaa
aaagaacttgaatctgtatcattgagaccagggaaacgagcttctggaagcttggagtcg
cctgtgatcctttcaaagcgccccagagagaaatctatggacagtccagaaagattttag
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integrated database retrieval system
