Cyprinodon variegatus (sheepshead minnow): 107089402
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Entry
107089402 CDS
T06110
Symbol
trpc5
Name
(RefSeq) short transient receptor potential channel 5
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvg01009
]
107089402 (trpc5)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107089402 (trpc5)
Protein phosphatases and associated proteins [BR:
cvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107089402 (trpc5)
Ion channels [BR:
cvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
107089402 (trpc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_5
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
107089402
NCBI-ProteinID:
XP_015237647
Ensembl:
ENSCVAG00000004711
LinkDB
All DBs
Position
Unknown
AA seq
1087 aa
AA seq
DB search
MNPMTQLYYKKAIYSPYRDRIPLQIVRAEVELSAEERAYLTAVEKGDYAGVKHALREAEV
YYNMDVNCLDPLGRSALLIAIENENLEIMELLLDHGIHTGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDSQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKRFAKDLLDQARSSRELETILNHRDNDQSEELDPRQCHDLAKLKLAIKY
HQKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFIIGLLFPVFSLIYLLAPKSAV
GRFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTIVEWMILPWVLGFIW
AEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNSSRPREEWEMWHPTL
IAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLN
QLYFYYETKASEEPNNCKGIRCERQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEF
TEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGT
LPPPFNIIPSPKSFWYLLMWLHNKLCRRGHPPGELSHKCENLREFTERHADSLIQNQHYQ
EVIRNLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRRPPRRHYSSS
SETTRDDGAMVSEDDSEPGDCTAAGVGVQKTKSVTFSNPVEDDVRPAPTLGVSALVRSIS
GLTQIDKEEEGSLEDKVGWGEEEEEDGKPKSNGLKTAMMPQTSTNALPSPSSSFSSTLTS
SLARTRSRLQRLSGPSAKTDSFKRLSYLFSRSKRKAPPTPLPLQSPPSYTISDGLLRPLG
SHTHSDFGLSDVTRSDSHLNEVGRSADSTSYSPLRTNGRDSLLTLPLPPPCPCQSLHCAS
NMSESSSRLLDSSEDVFQVEGIEGAGEGGIDRGGGGGMMMMGGWVGPCDDVLEDSCDVIE
DSVTTQL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaatgacacagctatactacaaaaaggcgatttattcgccgtaccgagaccga
atcccgcttcagattgtccgggctgaagtggagctgtctgctgaagagcgggcctacctc
accgctgtagagaaaggtgactatgcaggagtcaaacatgctcttcgcgaggcagaagtc
tactacaacatggacgttaactgtctggatccgctgggtcgcagcgctctcctcatcgcc
atcgagaacgagaatctggagatcatggagctcctgctggaccatggcatccacacaggt
gacgccttgctgtacgccatcaggaaggaggtggtgggcgccgtggagctgctgttatca
cacaggaggccaagcggggagaagcaggttccctccctgatgatggacagtcagttctca
gagttcacccctgatataactcccatcatgcttgctgctcacaccaacaactatgagatc
atcaaactacttgtccagcgcaaggtcaccatcccaaggccgcaccagataagatgtgac
tgtgtagagtgtgtatccagctcagaggtcgacagccttcgccattcacggtctcggctc
aacatctacaaggctctggcatcaccctctctcattgcgttgtccagtgaagatccaatc
ctcactgcctttagactgggctgggaactaaaagaattaagcaaggtagagaatgagttt
cgtcaggaatatgaggagctgtctcagcaatgcaagcgctttgccaaggaccttctggat
caggccagaagttcaagagaactggaaaccatcctgaatcacagagataacgaccagagc
gaggagctggaccccaggcagtgccacgacttggccaagctgaaacttgccatcaaatat
caccaaaaggagtttgtagcgcagccaaactgtcagcagctgctggccactctttggtat
gacggcttcccgggctggaggaggcgacactgggccgtcaagctggtgacctgcttcatc
attggactgctctttccagttttctcactgatctacctgttggccccaaagagcgcagtt
ggacgcttcattaagaagcccttcatcaagttcatctgccacacagcatcctatcttacc
ttcctcttcctcctcctcctggcttcgcagcatatcgcccgcaccaacctgcacatgcag
ggacctccacccaccattgtggagtggatgattcttccatgggtgcttggttttatctgg
gcagagatcaaggaaatgtgggatgggggattcacagagtacatacatgactggtggaac
ctgatggactttgccatgaactccctctacctggctaccatatcactgaagatagtggca
tacgttaagtataactcttctcgtccaagggaggagtgggagatgtggcacccaacgctg
atcgccgaggctctgtttgccatcgccaacatcttcagctcgctcagactcatctccctt
ttcacagccaactcccacctcgggcctctgcagatctctctggggaggatgctgctggac
atcctcaagtttctcttcatttactgtctggttctattggcatttgccaacggactcaac
cagctgtacttctactatgagacaaaggcatcagaagaaccaaacaactgtaagggcatc
cgctgcgaaaggcaaaacaacgcattctccacgttgtttgagactctccagtccctcttc
tggtccatatttggtctgctcaacctgtacgtcaccaacgtgaaagctcgccatgagttc
acagaattcgtcggggcgacgatgttcgggacatacaacgtcatctcactggtggttctg
ttaaacatgctcatcgccatgatgaacaactcctaccaactcatcgctgaccacgccgac
attgagtggaagtttgcccgcaccaagctgtggatgagttactttgacgagggcggcacg
ctgcctcctcccttcaacatcattcccagccctaagtccttctggtacctgctaatgtgg
ctccacaacaagctgtgcaggagaggccacccgcccggggaactctcacacaaatgcgag
aacctgcgagagttcacagagcgtcatgctgacagtctgatacaaaaccagcattaccag
gaagtgattcgaaacctggtgaagagatatgtggcggccatgatacggagcgccaaaaca
gatgaggggctgacagaggaaaactttaaggaattgaagcaggatatctccagtttccgc
tacgaagtgctggatctcctcggcaaccgacgtcctccccggcggcattactcttcctcc
agtgagacgacaagagacgatggtgcgatggtatcagaggatgatagtgagccaggtgac
tgtaccgcagcaggagttggagtccagaagactaaaagtgtcaccttctccaacccagtg
gaggacgacgtgaggccagcaccgacgcttggtgtgtctgcgctggtgcgctccatttca
gggttgacacagatagacaaagaagaggaggggagtctagaggacaaagtgggatgggga
gaagaggaggaagaagatgggaaaccaaagagcaatgggctaaagacagctatgatgcca
cagacctccaccaatgctctcccctcgccgtcttcatccttttcctcaacgttaacgtca
tcacttgctcgcacaagaagccgcctgcagcgcctctcaggtccgagtgcaaagacagac
tcttttaaacgcctctcatacttgttttcccgttccaaacgcaaagctccaccaacacca
ctccctctccagtctccgccttcatacacaatttctgatggtcttctccgtcccctcggg
agccacactcattccgactttggactcagcgatgttacaagaagcgattctcacctgaat
gaggtgggtcgctcagcggacagtacatcatactcaccgctcagaaccaatgggcgggac
tcccttctaacgctgcccctaccgcccccatgcccttgccaatccctgcactgtgcttcc
aacatgtctgagtccagctcaagactcctggactccagtgaggacgttttccaggtggaa
ggcatagaaggagcaggagaaggtggcattgatcgaggaggtggaggggggatgatgatg
atgggagggtgggtagggccgtgcgacgatgtcttagaggacagctgtgatgtcatagag
gactctgtcaccacgcagctatag
DBGET
integrated database retrieval system
