Cyprinodon variegatus (sheepshead minnow): 107093470
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Entry
107093470 CDS
T06110
Symbol
trpc6
Name
(RefSeq) short transient receptor potential channel 6
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
107093470 (trpc6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cvg04040
]
107093470 (trpc6)
Ion channels [BR:
cvg04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
107093470 (trpc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
PKD_channel
Ank
Ank_4
Ank_3
Ank_5
YVC1_C
Motif
Other DBs
NCBI-GeneID:
107093470
NCBI-ProteinID:
XP_015244020
Ensembl:
ENSCVAG00000023424
LinkDB
All DBs
Position
Unknown
AA seq
824 aa
AA seq
DB search
MGHVGAKPRRQTARGAGYLFKAHPSSCLSITEEVFLEAAEYGNIPEVRRMLEELPHLDIN
CVNYMGQNALQLAVASEHLEVVKLLLKKKELAKVGDALLLAISKGYIRIVEAILSHEAFT
DGQRLTNSPSLEETQDDFFSYDEDGTRFSHDITPIILASQCQEFEIVHMLLLRGARIERP
HDYFCQCKACIEHQRRDSFCHSLSRISAYKGLASPAYLCLSNEDPVMAALELSNELAVLA
NAEKEFKNDYERLSMQCKDFVVGLLDLCRNTEEVEAVLNGDTESCADQEISGRPNLIRLK
LAIKYEVKEFVAHPNCQQHLRSIWYENLTGLHQQTIAVKILLVLGVAVGLPVLAFIYWIA
PSSKLGKLMRGPFLKFVAHAASFIIFLCLLVLNAADRFAGTSLLPNMTTHDYPSQVFRMK
TTRFTWMEILIIFWVIGKIWEECKDIWLQNFQEYISEPWNLLDFSILAIFMTSFIARLMA
YWHAHSAQCYIDEHPSNTTLPSDVQYFQLARIHWIPSDPQLISEGLYAIAIVLSFSRIAY
ILPANERFGPLQISLGRTMKDIFQFMVIFTTVFVAFMVGMFDLYSYYLGAKYNVAFTTVE
ESFKTLFWAIFGLSEVKSVVLTINHKFIENIGYVLYGVYNIIMVIVLLNMLIAMFNSSFQ
EIEDDADVEWKFARAKLWFSYFEHGSTLPVPFNLVPSPKSVLSLLLGIKTFFKPPKENRE
ESKNGKDIRNLREHGGLKEDASLHPSRHQKIMNCLIKRYIFKAQRDKDNDEVNEGELREI
KQDISSLRYELLERGNRDLNTLADLVRQLGDVVQKEEQRMEMIS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atggggcatgtaggtgccaaaccccggagacaaactgcacggggagctgggtacctgttc
aaagctcacccttcctcctgcctttccattactgaggaggtgtttcttgaagctgcagag
tatggcaacatccctgaagtgagacggatgctggaggagcttcctcacctcgacatcaac
tgtgtcaactacatgggtcagaatgcactgcagctggcagttgcaagcgagcacttagaa
gtggtcaagcttttgcttaaaaagaaggaacttgcaaaagtaggagatgccttgctgtta
gccattagtaaagggtacatccgcatagtagaagccatattgagccatgaggccttcact
gacggtcagaggctaacaaacagccccagtctggaggagacacaagatgattttttctca
tatgatgaggatggcacacgtttttctcatgacatcactcccattatcctggcttcccag
tgccaggagtttgagatcgtacacatgctacttttgaggggggcccgtatagagcgtcca
catgactacttctgtcaatgcaaggcctgcattgagcatcagaggcgtgactccttttgc
cactctttgtctcgtattagcgcctacaaaggcctggcaagtccagcatatctttgcctt
tcaaatgaagacccagtgatggcagctttggagctgagcaatgaactcgccgttctggcc
aatgctgagaaagagtttaagaatgattacgagaggctgtccatgcaatgtaaggatttt
gtggtgggactcttggatttgtgtcggaatactgaagaagtggaggctgtcctaaatggt
gacacagaatcctgtgctgaccaggaaatctctggaaggccaaacctgataaggctgaaa
cttgcaataaaatatgaggttaaagagtttgtggctcatccaaactgtcagcaacatcta
cgatcaatctggtatgaaaacttgactggactgcatcagcaaacaatagcagttaaaatt
cttcttgtcctcggtgtagctgttggtttacctgttctggcttttatttactggatagca
ccatcaagtaagttggggaaacttatgcgtggacctttcctcaagttcgtggctcatgca
gcttccttcatcatattcctctgtctgctggttctgaatgcagcggaccgctttgcaggg
acatcgctactgccaaacatgaccacccatgattacccctcacaagtttttcgcatgaag
actacccgctttacctggatggagatacttattattttctgggtcataggtaagatatgg
gaggagtgtaaagatatttggttgcagaactttcaggagtacatctcagaaccatggaac
cttctggacttcagtattttggccatttttatgacctctttcattgcaagattaatggct
tactggcatgcccattctgcacagtgctacatcgatgagcatccatcaaacacgaccttg
ccttctgatgtacaatattttcagctggcaaggattcactggattccctcagacccacag
ctgatttctgaaggtctctatgcaattgccattgtgttgagtttttcccgcatcgcgtac
atcctgccagccaacgagaggtttgggcccttgcagatctctctgggaagaacgatgaaa
gacatttttcagttcatggttatttttacaacagttttcgtggcattcatggtgggaatg
tttgatctatattcatactaccttggagccaaatacaacgttgcctttacaacggttgaa
gaaagttttaaaacacttttctgggcaatctttggactttcagaagtaaagtccgtcgtt
ttaaccatcaatcataaattcatagagaatataggctatgttctgtatggggtatacaac
atcatcatggtgattgttctgctgaacatgctcatagccatgttcaacagctccttccag
gaaattgaggatgatgctgatgttgagtggaaattcgcccgagccaagctgtggttctcc
tactttgaacacggcagcactctgcctgtgcccttcaacctcgtacccagccccaaatct
gtgctgtccctcctactcgggataaagacattttttaaacctccaaaagaaaacagagaa
gagtcaaagaatggcaaagacataagaaatttaagggaacatggaggactgaaagaggac
gcatcacttcatccatctcgtcatcaaaaaataatgaactgcttaatcaaaagatacata
tttaaagcacagagagataaggataatgatgaagttaatgaaggtgaactgagagagatc
aaacaggacatctccagtcttcgttacgagctcctggaaagagggaaccgtgatttgaac
acactagccgatcttgtcaggcaactgggagatgttgtgcagaaagaagagcaaagaatg
gaaatgatttcttag
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integrated database retrieval system
