Cyprinodon variegatus (sheepshead minnow): 107093665
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Entry
107093665 CDS
T06110
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04115
p53 signaling pathway
cvg04145
Phagocytosis
cvg04148
Efferocytosis
cvg04350
TGF-beta signaling pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04518
Integrin signaling
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
107093665
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107093665
04518 Integrin signaling
107093665
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
107093665
04148 Efferocytosis
107093665
09143 Cell growth and death
04115 p53 signaling pathway
107093665
09144 Cellular community - eukaryotes
04510 Focal adhesion
107093665
09142 Cell motility
04820 Cytoskeleton in muscle cells
107093665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107093665
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107093665
Membrane trafficking [BR:
cvg04131
]
Endocytosis
Phagocytosis
Opsonins
107093665
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107093665
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
TSP1_ADAMTS
EGF
TSP1_CCN
Laminin_G_3
cEGF
VPS51_Exo84_N
Motif
Other DBs
NCBI-GeneID:
107093665
NCBI-ProteinID:
XP_015244344
Ensembl:
ENSCVAG00000017402
UniProt:
A0A3Q2D7H3
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MKVAGIFLLLMLWTCEGARVAESREDNSVFDLFELIRVPSKNHGVSLVKGDDPYSPAYRI
LNPDLIPPVPESAFRDLVDSVQAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGVVFEIIS
NGKANTLDIVYSTEKKQQVVSIEEVDLATGHWKNITLFVQEDRAQLFAGCEEVNTAEMDA
PIQNILTQGTPAGARLRVGKGAVKDKFMGVLQNVRFVFGTTLDAILRNKGCQKAAPGDTM
IVTNLNGSSAIRTEYIGHKTKDLQMVCGFSCEDLISMFKELKGLGVVVKELSTELRQLTN
ENKLIRTHMGIHSGICFHNGIKHNNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNVCEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGRDCVGEGRQT
EKCKMSPCPINGNWGPWSPWGTCTLTCGGGVQTRKRLCNDPAPKHGGKECVGDAIDKQMC
NKKACPIDGCLSNPCFSGAKCSSFPDGSWKCGKCPIGYTGNGIRCKDVDECKEVPDACFE
FNGVHRCENTEPGYNCLPCPPRYSGPQPFGKGVEQAAANKQVCTPQNPCLDGSHDCNKNA
RCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDDDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYIYNVDQRDTDLDGVGDMCDNCPLENN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTAGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggcagggatatttttgttgttgatgctgtggacctgtgagggtgcgagagtc
gcagagagtcgagaagacaacagtgtgtttgatttgtttgagctcatccgagtcccgagc
aagaaccacggggtaagcctggtgaaaggagacgacccatacagccccgcctacaggatc
ttaaacccggaccttattccccctgtccccgagagcgccttcagggacctggtggactcg
gtccaagcagagagaggtttcctccttctgctcaacttcaagcagtttaaacggacgagg
ggcagccttctgaccgtggaaaagcgagacggctccggagtcgtctttgagatcatctcc
aatggcaaagccaacaccttggacatcgtttactccactgagaaaaagcagcaggtggtt
tccatcgaggaagtggatctggccacgggtcactggaagaacatcacgctgtttgtgcag
gaggaccgcgcgcagctgtttgccggatgcgaggaggtgaacaccgctgagatggatgcg
ccaatacagaacatcctgacgcagggaacgccggccggcgcgcggcttcgggtcggcaag
ggggcagtgaaagacaagttcatgggggtgttgcaaaacgtgcggtttgtgtttggaaca
acgctggatgcgatcctgcgcaacaaaggatgccagaaggctgctcctggtgacacaatg
attgtgactaatctgaatggctcatccgccatccgaacagaatacattggacacaagact
aaagatctacagatggtctgtggcttctcctgtgaagatctcatcagcatgttcaaggag
ctgaaaggccttggtgtggttgtcaaagaactgtccactgagctccgccagctgacaaat
gagaacaagcttattagaacccacatgggcatacatagtggcatctgcttccacaatggc
attaaacacaacaacaaagatgagtggaccgtagatgactgcactgagtgcacttgccag
aactctgccactgtgtgtaggaagatctcctgccctctgataccctgtgctaatgctact
gttccagatggggagtgctgtccacgatgtggaacaccgagtgactatgctgaggacggc
tggtcgccctggtctgaatggacccattgttctgtgtcatgtgggcggggcatccagcag
cgagggcgctcttgcgaccgtatcaataatgtctgcgagggcacctctgtgcaaacccgt
gattgctatcttcaggagtgtgataaacgcttcaagcaagacggaaactggagtcattgg
tccccctggtcgtcatgctctgtcacctgtggtgctggtgtcatcactcgtatccgcctc
tgcaactctcccacccctcagctgggaggcagggactgtgtgggagagggcagacaaaca
gaaaagtgcaagatgtctccatgtccaattaatgggaactggggaccctggtcaccttgg
ggtacatgcaccctcacctgtggtggtggagttcaaacccgtaaacgcctttgtaatgat
cctgccccaaagcatggcggtaaagagtgtgttggagatgcaatagacaaacagatgtgc
aataagaaagcttgccctatagatgggtgcttgtccaacccctgcttttctggggccaag
tgcagtagtttccccgatggttcctggaagtgtggaaaatgccccatcggctacacaggc
aatggcataaggtgtaaagatgttgatgagtgcaaggaggtcccagatgcttgctttgaa
ttcaatggcgtacaccgctgtgaaaacacagagccgggatacaactgtctcccctgcccc
cctcgctactcgggaccccaaccgtttggcaaaggtgtggagcaagctgctgctaacaaa
caggtatgcacaccgcaaaatccttgcctagatggaagccatgattgtaacaaaaacgcc
cgctgtaactacctcggacacttctccgatcccatgttccgctgcgagtgtaagcctggt
tatgctggcaacggtcatatctgtggggaggatacagatttggatggatggcccaatgct
gatttggtgtgtgtggaaaatgctacttaccactgcaaaaaggacaactgtcccaatctt
ccaaactcagggcaggaagattatgataaggatggaattggagatgcatgtgatgacgat
gatgataatgatggcattcctgatgacagggacaactgtccgttcgtgtacaatcccagg
cagtatgattatgaccgcgatgacgttggggaccgctgtgacaactgcccttacaatagt
aatccagaccagacagacacagacaacaacggtgagggcgatgcctgtgctgtggacatc
gatggagatggaatactgaatgaaaaagataactgtccctatatatacaatgttgaccaa
agagacacagatctggatggagtgggagacatgtgtgataactgtcctctggaaaataat
cccgatcaggtggattcagatgatgatcgagtgggagacaagtgtgacagtaaccaggac
atcgatgaggatggacaccaaaacaacctggacaattgtccatacatccccaatgccaat
caggctgatcacgacaaggatggtaagggagatgcctgtgaccatgatgatgataacgac
ggcatccctgatgacaaagacaactgtagactggcgttcaaccccgaccagctggattct
gatggcgatggccgtggagatgcttgtaaggatgattttgatcaagacaacgtgcctgat
atctatgacgtgtgtcctgaaaactttgatatcagtgagacggacttccgcaagttccag
atggttcctttggatccaaaaggcacctcccagattgatccgaactgggtcgtccgtcat
caaggcaaagagctggttcagactgtcaactgcgatcctggtattgcagtcggttaccat
gagttcaactccgtggacttcagtggaactttctttataaatacagagagagatgacgat
tatgctggctttgtgtttggctaccagtctagttccaggttttatgtcgtgatgtggaag
cagatcacacagacatactggtcaagtaagcccaccaaggcccagggctactcaggcctg
tccatcaaagtggttaactccaccaccggcccaggagagcacctcagaaatgccctctgg
cacacaggcaacactgcaggacaggtccgcactctctggcatgaccctaaaaatgtcgga
tggaaagacttcactgcctacaggtggcatttgatccacaggccgagaacaggacttatt
agagttgtgatgtatgagggtaaaaagataatggcagattctggtagcatctatgacaag
acgtatgcaggtggcaggctaggtctttttgtcttctcacaagagatggtttatttctca
gaccttaagtatgaatgcagagatgcataa
DBGET
integrated database retrieval system
