Cyprinodon variegatus (sheepshead minnow): 107093665
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Entry
107093665 CDS
T06110
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04115
p53 signaling pathway
cvg04145
Phagosome
cvg04148
Efferocytosis
cvg04350
TGF-beta signaling pathway
cvg04510
Focal adhesion
cvg04512
ECM-receptor interaction
cvg04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
107093665
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107093665
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
107093665
04148 Efferocytosis
107093665
09143 Cell growth and death
04115 p53 signaling pathway
107093665
09144 Cellular community - eukaryotes
04510 Focal adhesion
107093665
09142 Cell motility
04820 Cytoskeleton in muscle cells
107093665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cvg04131
]
107093665
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cvg00536
]
107093665
Membrane trafficking [BR:
cvg04131
]
Endocytosis
Phagocytosis
Opsonins
107093665
Glycosaminoglycan binding proteins [BR:
cvg00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107093665
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
EGF
TSP1_CCN
cEGF
VPS51_Exo84_N
Motif
Other DBs
NCBI-GeneID:
107093665
NCBI-ProteinID:
XP_015244344
Ensembl:
ENSCVAG00000017402
UniProt:
A0A3Q2D7H3
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MKVAGIFLLLMLWTCEGARVAESREDNSVFDLFELIRVPSKNHGVSLVKGDDPYSPAYRI
LNPDLIPPVPESAFRDLVDSVQAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGVVFEIIS
NGKANTLDIVYSTEKKQQVVSIEEVDLATGHWKNITLFVQEDRAQLFAGCEEVNTAEMDA
PIQNILTQGTPAGARLRVGKGAVKDKFMGVLQNVRFVFGTTLDAILRNKGCQKAAPGDTM
IVTNLNGSSAIRTEYIGHKTKDLQMVCGFSCEDLISMFKELKGLGVVVKELSTELRQLTN
ENKLIRTHMGIHSGICFHNGIKHNNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNVCEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGRDCVGEGRQT
EKCKMSPCPINGNWGPWSPWGTCTLTCGGGVQTRKRLCNDPAPKHGGKECVGDAIDKQMC
NKKACPIDGCLSNPCFSGAKCSSFPDGSWKCGKCPIGYTGNGIRCKDVDECKEVPDACFE
FNGVHRCENTEPGYNCLPCPPRYSGPQPFGKGVEQAAANKQVCTPQNPCLDGSHDCNKNA
RCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDDDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYIYNVDQRDTDLDGVGDMCDNCPLENN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTAGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggcagggatatttttgttgttgatgctgtggacctgtgagggtgcgagagtc
gcagagagtcgagaagacaacagtgtgtttgatttgtttgagctcatccgagtcccgagc
aagaaccacggggtaagcctggtgaaaggagacgacccatacagccccgcctacaggatc
ttaaacccggaccttattccccctgtccccgagagcgccttcagggacctggtggactcg
gtccaagcagagagaggtttcctccttctgctcaacttcaagcagtttaaacggacgagg
ggcagccttctgaccgtggaaaagcgagacggctccggagtcgtctttgagatcatctcc
aatggcaaagccaacaccttggacatcgtttactccactgagaaaaagcagcaggtggtt
tccatcgaggaagtggatctggccacgggtcactggaagaacatcacgctgtttgtgcag
gaggaccgcgcgcagctgtttgccggatgcgaggaggtgaacaccgctgagatggatgcg
ccaatacagaacatcctgacgcagggaacgccggccggcgcgcggcttcgggtcggcaag
ggggcagtgaaagacaagttcatgggggtgttgcaaaacgtgcggtttgtgtttggaaca
acgctggatgcgatcctgcgcaacaaaggatgccagaaggctgctcctggtgacacaatg
attgtgactaatctgaatggctcatccgccatccgaacagaatacattggacacaagact
aaagatctacagatggtctgtggcttctcctgtgaagatctcatcagcatgttcaaggag
ctgaaaggccttggtgtggttgtcaaagaactgtccactgagctccgccagctgacaaat
gagaacaagcttattagaacccacatgggcatacatagtggcatctgcttccacaatggc
attaaacacaacaacaaagatgagtggaccgtagatgactgcactgagtgcacttgccag
aactctgccactgtgtgtaggaagatctcctgccctctgataccctgtgctaatgctact
gttccagatggggagtgctgtccacgatgtggaacaccgagtgactatgctgaggacggc
tggtcgccctggtctgaatggacccattgttctgtgtcatgtgggcggggcatccagcag
cgagggcgctcttgcgaccgtatcaataatgtctgcgagggcacctctgtgcaaacccgt
gattgctatcttcaggagtgtgataaacgcttcaagcaagacggaaactggagtcattgg
tccccctggtcgtcatgctctgtcacctgtggtgctggtgtcatcactcgtatccgcctc
tgcaactctcccacccctcagctgggaggcagggactgtgtgggagagggcagacaaaca
gaaaagtgcaagatgtctccatgtccaattaatgggaactggggaccctggtcaccttgg
ggtacatgcaccctcacctgtggtggtggagttcaaacccgtaaacgcctttgtaatgat
cctgccccaaagcatggcggtaaagagtgtgttggagatgcaatagacaaacagatgtgc
aataagaaagcttgccctatagatgggtgcttgtccaacccctgcttttctggggccaag
tgcagtagtttccccgatggttcctggaagtgtggaaaatgccccatcggctacacaggc
aatggcataaggtgtaaagatgttgatgagtgcaaggaggtcccagatgcttgctttgaa
ttcaatggcgtacaccgctgtgaaaacacagagccgggatacaactgtctcccctgcccc
cctcgctactcgggaccccaaccgtttggcaaaggtgtggagcaagctgctgctaacaaa
caggtatgcacaccgcaaaatccttgcctagatggaagccatgattgtaacaaaaacgcc
cgctgtaactacctcggacacttctccgatcccatgttccgctgcgagtgtaagcctggt
tatgctggcaacggtcatatctgtggggaggatacagatttggatggatggcccaatgct
gatttggtgtgtgtggaaaatgctacttaccactgcaaaaaggacaactgtcccaatctt
ccaaactcagggcaggaagattatgataaggatggaattggagatgcatgtgatgacgat
gatgataatgatggcattcctgatgacagggacaactgtccgttcgtgtacaatcccagg
cagtatgattatgaccgcgatgacgttggggaccgctgtgacaactgcccttacaatagt
aatccagaccagacagacacagacaacaacggtgagggcgatgcctgtgctgtggacatc
gatggagatggaatactgaatgaaaaagataactgtccctatatatacaatgttgaccaa
agagacacagatctggatggagtgggagacatgtgtgataactgtcctctggaaaataat
cccgatcaggtggattcagatgatgatcgagtgggagacaagtgtgacagtaaccaggac
atcgatgaggatggacaccaaaacaacctggacaattgtccatacatccccaatgccaat
caggctgatcacgacaaggatggtaagggagatgcctgtgaccatgatgatgataacgac
ggcatccctgatgacaaagacaactgtagactggcgttcaaccccgaccagctggattct
gatggcgatggccgtggagatgcttgtaaggatgattttgatcaagacaacgtgcctgat
atctatgacgtgtgtcctgaaaactttgatatcagtgagacggacttccgcaagttccag
atggttcctttggatccaaaaggcacctcccagattgatccgaactgggtcgtccgtcat
caaggcaaagagctggttcagactgtcaactgcgatcctggtattgcagtcggttaccat
gagttcaactccgtggacttcagtggaactttctttataaatacagagagagatgacgat
tatgctggctttgtgtttggctaccagtctagttccaggttttatgtcgtgatgtggaag
cagatcacacagacatactggtcaagtaagcccaccaaggcccagggctactcaggcctg
tccatcaaagtggttaactccaccaccggcccaggagagcacctcagaaatgccctctgg
cacacaggcaacactgcaggacaggtccgcactctctggcatgaccctaaaaatgtcgga
tggaaagacttcactgcctacaggtggcatttgatccacaggccgagaacaggacttatt
agagttgtgatgtatgagggtaaaaagataatggcagattctggtagcatctatgacaag
acgtatgcaggtggcaggctaggtctttttgtcttctcacaagagatggtttatttctca
gaccttaagtatgaatgcagagatgcataa
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