Cyprinodon variegatus (sheepshead minnow): 107094717
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Entry
107094717 CDS
T06110
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg03440
Homologous recombination
cvg03460
Fanconi anemia pathway
cvg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107094717 (brca1)
09124 Replication and repair
03440 Homologous recombination
107094717 (brca1)
03460 Fanconi anemia pathway
107094717 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cvg01009
]
107094717 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cvg04121
]
107094717 (brca1)
03036 Chromosome and associated proteins [BR:
cvg03036
]
107094717 (brca1)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107094717 (brca1)
Enzymes [BR:
cvg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107094717 (brca1)
Protein phosphatases and associated proteins [BR:
cvg01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107094717 (brca1)
Ubiquitin system [BR:
cvg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107094717 (brca1)
Multi subunit type E3
BRCC complex
107094717 (brca1)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
107094717 (brca1)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
107094717 (brca1)
BRCA1-A complex
107094717 (brca1)
BRCA1-B complex
107094717 (brca1)
BRCA1-C complex
107094717 (brca1)
BRCA complex
107094717 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
107094717 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_2
RTT107_BRCT_5
zf-RING_5
zf-Nse
PTCB-BRCT
zf-ANAPC11
zf-RING_4
zf-rbx1
TRAF3_RING
U-box
zf-RING_6
zf-RING_10
zf-MIZ
Lmo2446-like_N
Sina_RING
Motif
Other DBs
NCBI-GeneID:
107094717
NCBI-ProteinID:
XP_015245992
Ensembl:
ENSCVAG00000021373
UniProt:
A0A3Q2GQI9
LinkDB
All DBs
Position
Unknown
AA seq
1314 aa
AA seq
DB search
MTTPKAEDVRKGIAVLWETLQCPICLELMTAPVSTKCDHQFCKFCITKLLDNSKPNRATC
PVCKSKITKRSLQESPGFQRLVAGLQDMIQAYEHDTRTNYFTGLPQERMNANITDRGTSK
HAANLSSGNTFGTDLNNLETTGCDDHPQSCSSTAAALNGFAQLMGLEDSVSVTAENEGLD
GRLCDILPASDGKTSNSADHLETENVGKNASSSRSKPENSDCLKPTQEETVQQPVRKSSR
KKQKKEVDPEKVDEQKKKKSLEKVAEWLLKVPAKEELELENPPTHEDEEDSCSSASTLDL
VPQNDELNPKKDDRTKGLEEQVFGAVYKRRGNKVIEPLTAKERKNIKRVSKLTKNSNLHH
CEEKQVENKTSGDFYKPDVEEKPDGSVEQLKNLSESDKNQPEASPPKRRTRKNMQQLQVE
PSEQTDLKSEGREEKGGSRKARTSNSNRKKPTKEAESAVLSEFQNSETSPKPHERSEKVV
VQIETYPSSEEQKTPVMSSARRSRRLQLFAEEDQENRSAKKLTEDTSDEAMDAVLPKSGN
LPIEAKRNGCIYEEDIGGIESAENSGRASLRQTEAEVPKAQTPPKAAADCPPSVVPNSTS
PSVPSVVGPTLDSEKQEMNYQRDSQQEISVNEAKRKVEQSEDCRNDSELDTEQLLRTFKA
AKRKSFCLGEPNVKRSRGLDDAATSDAGSELSENVGEVLKVTGKLVCSDVIPPSDSPDQK
KTDQSVLEASDPNSKGSVQEDDAEYCPIRSSFSSGLSPNKVSRRDRDSPQSVVPQVIESG
LCFMAVERDAPRSSQVPSSLKEIRDGVSNYPSFQDASLTPDILEIHKADLNASVSGELST
PSSVKMNPKKKRTQKLDSSSESESSDSKEEFPALAHIFGVSNQPQTKAKDQEEMGETSRG
EGVCGETDGAEPLSRPPGSPSPEQVHSSQASVDLFGTPAECDAPENDAGISIESSEFSSE
VPVTQQKIEMQKELVRLEKLIALVSEVLQEKEGSPAREGLPSESDQGGKDRGPDVPKPLP
NDQDPVQPSDREDVLDAETRSSDDKVVAKQGSVSESAVNESSCAALPVKGTKIPSSTPAT
KTVINRDSPPDGQEDKENNSPPKDRPKPKLVLVTSGLGPNEQIMVKKFAKRLGGHVVPQV
TPEVTHVIMRTDDQLVCERTLKYFLGIAGRKWVVSFLWISECFKEKKLLEESSFEVRGDV
VNGPNHQGPLRARTTQDSDLLMKGYTICLKGPFTDMSTDDMQWMVELCGATVVKDPLLLD
GKQKSHQIIIVQPRANSSSSLYSSLSRKATVVSRGWLLDTVATYTLQKYSSYTV
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgacgactccaaaagcggaagatgtcagaaaggggatcgcagtcctgtgggaaactctt
cagtgtccaatttgcctggagctaatgactgcacccgtttctactaagtgtgatcatcag
ttttgcaaattttgtattacaaaacttttggacaactccaaaccaaacagagccacttgc
cctgtttgtaaatccaagataacaaagaggagcctgcaggaaagccctgggtttcagaga
cttgttgctggattgcaagacatgatccaggcatatgaacatgacaccaggacaaactac
tttactggactgccacaggaaaggatgaacgctaatatcacagatagagggacaagtaaa
catgctgctaatttatcatctggaaacacgtttggaactgatctgaacaatttggaaacc
acaggctgtgatgatcatcctcagtcatgctcctcaactgcagcagctctgaacggattc
gctcagctaatgggacttgaagactcggtttctgtaacggcagaaaacgaaggcctggat
ggccgcctgtgtgacatcctgccagcttctgacgggaagacgtccaactctgcagatcat
ttagagacagaaaatgttgggaaaaatgcctcatcgtcaagaagcaaaccagagaactct
gattgtttgaaacctactcaggaggaaactgttcaacagcctgtcaggaagtcctctagg
aagaaacaaaaaaaggaagtagatcccgaaaaggttgatgagcagaaaaagaagaagagt
ttagagaaagtcgcagaatggctcctgaaggttccagccaaagaagagctggagctggag
aacccccccacccatgaggatgaagaggacagctgttcgtctgcatcgacgctggatttg
gtgccgcagaacgatgaactgaatcctaagaaggacgatcgcaccaaaggcctcgaagaa
caggtttttggtgccgtctacaaacgtagagggaacaaagttatagagccgctaacggct
aaagaaagaaaaaacattaaaagagtttcaaaactgacgaagaatagcaacctacaccac
tgtgaagagaaacaggttgaaaataaaaccagcggggacttttataaaccagatgtagaa
gaaaagcctgatggaagtgttgaacagttaaaaaacttgtcagaaagcgacaaaaatcaa
ccagaagcatcaccgccaaagagaaggactcgtaaaaatatgcaacagcttcaagttgaa
ccatcagagcaaactgatttaaaatcagaaggtagagaggagaaaggcggcagtaggaaa
gcaagaacgtctaattcaaacagaaagaaaccaactaaagaggctgaatctgctgtttta
tcagaatttcagaacagcgaaaccagtcctaaaccgcatgaaagatcagagaaagtcgta
gttcaaatcgagacgtatcccagcagcgaggaacagaaaactccagtcatgagcagcgcc
agaagaagcagaagacttcagctttttgcggaggaggatcaggaaaatcgcagcgctaaa
aagctaactgaagataccagtgatgaagccatggatgcagtgctgcctaaaagtggaaac
ctaccaattgaagcgaaaagaaacggatgcatctatgaggaggatatcggagggatagaa
agcgcagagaacagtgggagagcctccttaagacaaaccgaggcagaagttcccaaagcc
caaactcctcctaaagcggctgctgactgtcctccctctgtggttccaaactctacaagc
ccatccgttccatctgtggtaggtccgacgcttgacagcgagaagcaggagatgaattac
caacgtgattctcagcaagaaatcagtgttaatgaggctaaacgtaaagtagaacaatcc
gaggattgcaggaatgacagtgagctggacacagagcagctgctcaggacctttaaagct
gctaaaaggaaatccttctgtctcggggaaccaaacgtgaagagaagccgtggtttagat
gatgcagcgaccagtgatgcaggctctgaattatctgaaaatgtcggcgaggttttaaaa
gttactggaaagctggtttgcagtgatgtgattcctccttccgactcccccgaccagaaa
aaaacagatcaatccgtgctggaagcttctgatcctaatagcaagggttcagtgcaggag
gatgatgctgaatactgtccaatcagaagcagcttcagcagtggtctcagtcctaacaaa
gtatcaaggcgggacagagacagccctcagtctgtggtccctcaggtcatagagtctggc
ctctgcttcatggctgtagagcgtgatgcaccaaggagctcccaggtccccagtagtctg
aaggagatcagagatggtgtttccaactatccttcattccaagacgcctctttaaccccg
gacattttagagatccataaagcagatttgaacgccagtgttagcggagagctcagcact
ccatcctctgtcaagatgaacccgaagaagaagagaactcagaagctggactcttcatct
gagtcagaaagcagtgactcaaaagaggagtttccagctctggctcacatctttggagtg
tcaaatcagccccaaaccaaggccaaagatcaggaggaaatgggtgaaactagcagaggt
gagggtgtctgtggggagaccgatggagcagaaccactgagccgtcctcctggcagcccg
agtccagagcaggtccactctagtcaggcgtctgtggacctgttcggcacaccagctgaa
tgtgatgcccctgaaaatgatgcaggcatttccattgaatcctctgaattctcaagcgaa
gttcctgttacacagcaaaagatagaaatgcagaaggagctggtgaggctggagaagctg
attgcgttggtctcagaggtgcttcaggagaaagaaggcagccctgccagagaagggctg
ccttcagagagcgatcagggcggtaaagacaggggcccagatgttcccaaacccctcccg
aatgatcaggacccagtccagccttcagacagggaggatgttttagatgcagaaacaaga
tcctcagatgataaagtagtggcaaagcagggcagcgtttcagagagcgctgtaaacgaa
tcatcttgtgcggcattgccagtaaaaggcacaaagatcccgagttcgactcctgcaacc
aaaacggtcataaaccgtgattcaccgccagatggtcaagaagacaaagaaaacaacagt
cctccgaaagaccgacctaaacctaaacttgtcctggtgacgtctggattgggccccaat
gagcagataatggtgaaaaagtttgccaagagactcggcggtcacgtcgttccacaggtc
acgccagaggtcacccacgttataatgcgcacagatgaccagctggtatgtgagcgcact
ctgaaatatttccttggaatcgcgggcagaaagtgggtggtcagcttcctctggatttct
gaatgtttcaaagagaagaagttgttggaagagagttcatttgaagtgagaggcgatgtt
gtgaatggacccaaccaccaagggcccttgagagctcgtaccacacaggacagtgatctt
ctcatgaagggctacacgatctgcctcaagggaccttttacagacatgtccacagatgac
atgcagtggatggttgagttgtgcggagctacagttgttaaagatccacttcttcttgat
ggcaagcagaaatcccaccagatcatcatcgttcagcccagggccaattcatcgtcctcc
ttgtacagcagtctgtccaggaaggccacagtcgtgtcccgtggatggctgctggatacc
gtagcaacatacacactgcagaagtacagcagttacactgtgtga
DBGET
integrated database retrieval system
