Cyprinodon variegatus (sheepshead minnow): 107096018
Help
Entry
107096018 CDS
T06110
Name
(RefSeq) zinc finger protein GLI2-like
KO
K16798
zinc finger protein GLI2
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
107096018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cvg03000
]
107096018
Transcription factors [BR:
cvg03000
]
Eukaryotic type
Zinc finger
Cys2His2 GLI-like
107096018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
FOXP-CC
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
107096018
NCBI-ProteinID:
XP_015247950
LinkDB
All DBs
Position
Unknown
AA seq
1293 aa
AA seq
DB search
METPSPRATEKKDKMDGSSFSDVPKKASPSETRAPQHLFPTFHTPIPIDIRHHEGRYHYE
PHALHAMHSPAGLTGSPVISDISLIRLSPAAMTTGESPFSQPHPYVTPHMEHYLRSVHGS
PTLSMISAARGLSPADLAHEHLKERGLFGLHPPPPPPPPPPGAGAAEYYHLMASHRSPYS
ELLMQGAGAPPGAHLSDYISPIDVSRFSSPRLTPRLSRKRALSISPLSDASIDLQTMIRT
SPNSLVAYINNSRSSSAASSSYGHLSVGGLSFQLKGSFQSVHSLVRMEVILGAMNARSSR
LFFKNGFSCVFSSQNHGGDSAVSSSVDPISKRSKVKAELDGLKPGSPQSPNRYGAVHDLK
EDTDRDECKQEPEAVYETNCHWEGCSKEYDSQEQLVHFEGCSKAYSRLENLKTHLRSHTG
EKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYVCKIPGCTKRYTDPSSLRKHVKTVH
GPEAHITKKQRGDPPPRPPAPRENGENEKGGQLHREDKLSENGSPRVPEDYLHVKSIKTE
NSVMYQSSPGGQSSCSSEPSPLGTNNDSGVETAAHSGGSLGDLSTLDDLPFVDSLGFEDS
SGGGAAVGLHLRKQLSTSQCLENLKKEKLKTVRDSCRWASNPTPAGHRGVTLPPIPTSGS
LVESSTMCEDPASFPGSGLGLLSSDKITLLANLSERRDSTSSTLSSVYTLSRRSSGISPG
FSSRRSSQTSQFGANRLTNISSAGSYDPISADISRRSSQTSQFGGNGCGPGGGGLGLPGP
LSLTPAQHYRLKAKYAAATGGAPPTPLPYLDQSCQDFTEHSSKNSMRSAQFNQERSIFPH
EVPSHVPRRASEPVRPLDPLSQPQMQRYNSMVTLNRRVSLQPHPPPDRRRSSQQGCVQTG
GSHCYPYSQRPPSISENITTETRSCRGNSSGLEGVQGAPSAQQLYRQSGMDGLNPSPGRH
RHMGSSSPHSGAANPQWNRFSSGLTGAAQQYCRLEGHGNLAVVQQSQNVGPYSVTSNQQM
VQTLSNRGVQLSSEAGPVLLQQSNLNEPASCRFGFSPGSYDRNGNLPFSPCGTMALHCKE
EPNDVELCRFQPVQIKMESSDASAVMLDQQNCNTRSQNGFQPGIQNHLQRRPPAEPKSPN
LSRPTLVPSDDSQLAKASGLPYNSDDNALFYRGQIQVLEPNGNLDCQVSLSVGSPSAAPG
SADNQADRTVAVEHAQIDFDSMLDDGDHSSLMSGNLSPGLLLGFSPGSSRLTTPRNSVTL
PSVPAGTGNMAIGDMSSLLTALAEENKFLNLIA
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggagaccccgtcaccgagagctacggagaagaaggacaaaatggacggcagcagcttc
agtgacgtcccaaagaaggcctcgccctccgaaaccagagccccccagcacctcttcccc
accttccacacgccgatccccatcgacatccggcaccatgaaggacggtaccactacgag
ccccacgctctgcacgccatgcacagccctgcaggactgacgggcagccccgtcatctca
gacatctctctgattcgcctgtcgcccgctgccatgacgaccggcgagtctccgttcagc
cagccccacccgtacgtcacgccccacatggagcactacctgcgctccgtccacggcagc
cccaccctgtccatgatctccgcggcccgcggactcagcccagcagacctggctcatgag
catctgaaggagaggggtctctttggtcttcatcctccgcccccccctcctcctcctcct
ccaggggccggggcagcagagtactaccatctgatggcgagccaccggagcccctacagc
gagctcctgatgcagggggcgggggccccgccgggggcccacctctccgactacatctct
cccattgacgtgtcccgcttctccagccccagactgacgcccagactcagcaggaagagg
gcgctgtccatctcgccgctgtctgatgccagcatcgacctccagaccatgatcaggact
tcaccgaactccttggtggcgtacatcaacaattcacggtccagttcagccgccagcagc
tcgtatggacacctgtcggtcggcggactgagcttccagttaaagggaagcttccagtca
gtgcactccctggtgaggatggaggttatactgggagctatgaacgcccgttcctcccgt
ctcttctttaaaaatggattttcttgcgttttctcttctcagaaccacggaggagactct
gccgtcagcagctcggtggatcccatcagcaaacgctccaaagtgaaggcggagctggac
ggactgaagccgggatctccgcagtcaccgaaccgttacggcgccgtgcacgacctgaag
gaggacacggaccgggacgagtgcaagcaggagcccgaggccgtttatgagaccaactgt
cactgggagggctgcagcaaggagtacgacagccaggagcagctggtgcattttgagggc
tgctccaaggcctactcccgcctggagaacctgaagacccacctgcgctctcacaccggg
gagaaaccgtacgtctgcgagcacgagggatgcaataaggcgttctccaatgcctcggat
cgagccaagcaccagaaccggactcactccaacgagaaaccgtacgtttgcaagatcccg
ggctgtaccaaacgctacacggaccccagctcgctcaggaagcacgtgaaaacagttcat
ggcccagaggcccacatcaccaagaagcaacgcggcgacccgccgcccaggccgccggcg
cccagggagaacggcgagaacgagaaaggcggtcagctccacagggaggacaagctgtca
gagaacggctcccccagagtcccggaggactacctgcacgttaaatccatcaagacggaa
aactcagtgatgtatcagtccagtcctggcggtcagtcatcgtgtagcagcgaaccatca
ccgcttggcaccaacaatgacagtggagtagaaacggcggcgcacagcgggggaagcctg
ggggacctcagcaccctggacgacctgccgttcgtggactcgctgggattcgaggactcc
tccggtgggggtgcagcggtgggcctccatctaagaaagcagctgagcaccagccagtgc
ctggagaacctgaagaaggagaaactgaagactgtgagggactcgtgtcggtgggccagc
aacccaacgcccgctggccatcggggcgttacgctgccgcccataccgaccagcgggtcc
ctggtggaaagttcgaccatgtgtgaggatcccgcttccttcccgggctctggcttaggt
ctgctgagctctgacaagataaccctgttggcaaacctctccgagcgccgtgacagcacc
tccagcaccctgagctcagtctacacgctcagccggcggtcctcgggcatctccccgggt
ttctccagtagacgctccagccagacgtctcagtttggcgccaaccgcctgacaaacatc
agctcggccggctcctatgaccccatctctgcggatatttctcgccgttccagtcagacc
agccagtttggggggaatggctgcggccccggcgggggtgggcttggcctacccggtccc
ctcagcctgaccccagcccagcactacagactaaaggcaaagtacgctgctgcaactgga
ggcgctcctcctacaccgcttccatacttggatcaatcatgtcaggatttcactgaacac
tcgtccaaaaacagcatgagatccgctcagttcaaccaggaacgaagcattttcccccac
gaagttccgtcccacgtcccccgacgagccagtgaacctgtgagacctttagatccgctc
agccagccgcagatgcagcggtacaacagcatggtcaccctaaacagaagggtgtccctg
cagccccatcctccacccgatcgcagacgctcatcgcagcagggatgcgtccaaacaggc
ggcagtcactgctacccctacagccaacggccgccgagcatctcagagaatatcaccaca
gaaacacgaagctgcagaggaaactcatccgggctggaaggtgtccaaggagctccaagc
gcacagcagctgtaccgccagagcgggatggacggtctgaacccgagcccaggacggcac
cgacacatgggttcatcctctccccacagcggcgctgctaatccacagtggaacaggttt
tcctcaggactcacgggggccgctcagcagtactgcagactagaaggacatgggaatcta
gctgtggtccagcagagccagaatgttggaccgtacagtgtgacctccaaccaacagatg
gtccaaaccttgtccaacagaggcgtccagctcagctctgaagcaggaccggtcctcctc
cagcaatctaacctcaatgaacctgccagctgtcggtttgggttcagcccaggttcctac
gacaggaacggtaacctcccgttctcgccctgcggcaccatggcgctgcactgcaaggag
gagcccaacgacgtggagctctgccggttccagccagtccagataaaaatggagagcagt
gacgcttcggctgtgatgttggaccagcagaactgtaacaccaggagccagaatggcttc
caaccggggattcagaaccacctccagcgaagaccaccagcagaaccaaagtctccaaac
ctgtcccgcccaactctggtgccgtcagatgattcccaactagccaaagcttcaggactt
ccttacaattccgatgacaatgctctgttctacaggggccagatccaagtcctggagccc
aacgggaacctggactgccaggtgtccctgtcggtcggctcgccttcagcggctccaggc
tcagcagacaaccaggcagacaggacagtcgccgtggagcacgctcagatagactttgat
agcatgcttgatgacggggatcactccagcctgatgtcaggaaacctgagtccagggttg
ctgctgggcttttcgccgggttcctcccgcctgaccacgcccaggaactctgtgacgcta
ccctcggttccggcaggaacagggaacatggccatcggggacatgagctcactgctgacg
gcgctggcagaggaaaacaagttcctcaacctgatcgcttaa
DBGET
integrated database retrieval system
