Cyprinodon variegatus (sheepshead minnow): 107102105
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Entry
107102105 CDS
T06110
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cvg03036
]
107102105 (smchd1)
03400 DNA repair and recombination proteins [BR:
cvg03400
]
107102105 (smchd1)
Chromosome and associated proteins [BR:
cvg03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107102105 (smchd1)
DNA repair and recombination proteins [BR:
cvg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107102105 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
HATPase_c
OMS28_porin
Motif
Other DBs
NCBI-GeneID:
107102105
NCBI-ProteinID:
XP_015256764
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MITVYDLRFGKPQDSKKTLQTNDLDFHKFLQLVHMEFVIPLNQKFVLVTTDRTVVDYGKF
KELQNGSTLYLLQNQHQDLAVAVEESIHFVPHYNTLIESGTFEYFAEGQEALPCSLAELV
DNSLSATAKNTGVRMIEIRLMFDKKPAVIVLDNGCGMTSKQLNNWAVYRLSKFTRENSTF
KSDQQGYVSPEPVPRSLNSDISYFGVGGKHAAFQIGESVRMISKPISSPDVHELVLSKEE
FQKKEQNKEDVYKGTILNRKPGDFSHIKGNEAFLQDIIREETGKHSFTAVVITAICPEHI
KYLKQDFKEWTRKLAHFYHYYIHGVDGNLQNKPQGSNGSPAINILVTLRDKSSKSPIGVN
LRNVNDDIQTLYINSAVDTFEFKATTQEGGIVDGVLRYHPFLYDKETYPKDPNIIQAPPE
DDNDENEAAVMNQARGKRDIFECFWNGRLIPYTTISEFDWCRQPYKTTPDLPPECYSRFS
GVLFTNDKFQVNATKQKFMDLEIKLKHRDTLFIPVPKVQILDYSLWDKW
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgattactgtgtacgacctgcgcttcgggaagccgcaggattctaagaaaacgctgcaa
acaaacgacttggactttcataagtttcttcaacttgtgcacatggaatttgtcatccct
ttaaaccagaaatttgtgttggtaacaactgaccggacagttgttgactatggaaaattt
aaggagcttcagaatggcagcactctctatttattgcaaaaccaacaccaagacctggca
gttgcagtggaggagtctatccactttgttcctcactacaacacgttgattgagagtgga
accttcgagtatttcgccgagggacaggaagcactgccttgttctcttgctgagctggtg
gacaattctctttcggccactgctaaaaacacaggagtcaggatgatagagatccgtctg
atgtttgacaaaaaacctgcagtcatcgttttggacaacgggtgtgggatgacctcgaag
cagctcaataactgggctgtctatagactctctaagttcacaagggaaaacagcacattt
aaaagtgaccaacagggatatgttagccctgagcctgtgccacgtagtctcaacagtgac
atatcctactttggagttggaggcaaacacgcagctttccagattggggagtcagtcaga
atgatcagcaaaccaatcagctcgccagacgttcatgagttggtcctgtcaaaggaggaa
ttccagaaaaaagagcagaacaaagaagatgtttacaaagggaccatcttgaacaggaag
cctggtgacttctcacacattaaaggcaacgaagcctttcttcaggacatcatcagggag
gaaactgggaagcacagcttcactgctgttgtcatcacagcaatctgccctgagcacata
aaatatctaaagcaggactttaaagagtggaccagaaagctagcgcacttttatcattat
tacattcatggggtcgatggaaaccttcagaataagcctcaaggatccaatggcagccca
gcaattaatattctggtaactctgcgagataaatcttctaaaagtccaattggggtaaat
ctcagaaacgtgaatgatgacatccagactctgtacataaactcagctgtcgatacgttt
gagtttaaggccaccacacaagagggcggcatcgtggacggagtcctaagatatcatcct
tttctctatgacaaggagacttacccgaaagatcccaatattattcaagcacctcctgag
gacgataatgatgagaatgaagctgcagtcatgaatcaggccagagggaagagggacatc
tttgagtgtttctggaatggacggctcatcccttacaccacaatttctgagtttgattgg
tgccgtcagccctataaaactacacccgatttgcccccagaatgctacagtcgcttctct
ggggtgcttttcacaaatgacaaattccaggtcaatgcaaccaaacagaagttcatggac
ttggagattaagctgaaacacagggataccctctttattcctgttcctaaagttcagata
ctggattattccctttgggacaagtggtga
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