Cyprinodon variegatus (sheepshead minnow): 107104024
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Entry
107104024 CDS
T06110
Name
(RefSeq) plakophilin-1-like
KO
K10387
plakophilin 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04382
Cornified envelope formation
cvg04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
107104024
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107104024
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cvg04812
]
107104024
Cytoskeleton proteins [BR:
cvg04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
107104024
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
SIL1_FES1_HPBP1_C
Atx10homo_assoc
Symplekin_C
PWI_CCDC43
Motif
Other DBs
NCBI-GeneID:
107104024
NCBI-ProteinID:
XP_015259396
Ensembl:
ENSCVAG00000020834
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
MSKMSKADPLKSAISIENVDDTSLALPSGNQYRSGEQRVKAQVQTVRRIKSRHSSNSSRS
GSTSMSPTSPVYDSVFTDGVKTPSHTSNGSAFYSNGFSKSFTIDKNISNHQSITNLGSTV
RKKSVTSGYRFERTQPTAGSTVALGHANTSRSEPGVAWGRYGTQLSVPHTRNPTTEQQAS
RNNYRNQRSTSNHFVQRTISQSQPLYPANGFGLTHKQSQYKGSQPNMSKTPTQQTTTDSS
SKTKINSGSNGNILNADITMKEAVQFLTSDDENYQNCGASYIQHNTFISDKAKEEVLKLK
GIHPLVGLLHSHNSQVKHTASAALRNLSFKSDKNKEEIHRCDGITEVANQLRDSESVDLD
KQLTGLLWNLSSADNLKPDLLKHALPVLMEHVILPYTTRSGDTIRDPDVFLHTTGCLRNL
SSAKESSRQTMRKCRGLIDSLTAYIKDCLEKEKTNDECLENCVGILHNLTFRLEDEAPML
FTNINTLARSQLRSTSPNNSNPVGCFSSQTKLPQVERPFDFAVIEDPQPKGPSLLIHSKT
LQDYLSLLSLSTGEELQEACCGTLHNLTAREGIVSSVISQIIVQKLNGMQVIAPLINSKK
VNLQKTTLALVGNLIKNPNLHQAVGRKALPELLSLLAEGTSGANESDDNLAMACNATSCL
VLKDPDMTKRYLGTDFIKSLSSISQNMYFPKSSKAAAVLLVKIWSDKELQSFFKKQGLTK
SLFVNDTTMAAHRSLHIVD
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaatgtcgaaggccgatccgctgaaatcggcgatttccattgagaatgtggac
gacacgtcgctggctctgccgtcagggaatcagtaccgatccggagagcagcgcgtaaag
gcgcaagtgcaaactgtcaggaggataaagtcgaggcactcgagcaacagcagcaggagc
ggatctacttctatgagcccaacaagccctgtgtatgactccgtgtttacagatggggta
aagacaccgtcccacacatctaatggaagcgccttctacagcaatggtttctcaaaaagt
ttcaccatagacaaaaacataagcaatcatcaatcaatcaccaacctaggatctactgtg
aggaaaaagagtgtgacatcagggtatcgctttgagagaactcaacccactgctggcagt
actgtggctctgggtcatgctaacaccagccgcagtgaacccggtgtggcctggggcaga
tatggcacccagctgtctgtcccacacaccagaaaccccaccacagaacagcaggccagc
aggaacaactacaggaatcagcgtagcaccagcaatcactttgtgcagaggaccatctcc
cagtcccaacctctgtaccctgcaaacggctttggtctgactcacaaacaaagtcagtat
aaaggcagccagcctaacatgagcaagactcccacacagcaaaccactactgactcttca
tccaagactaaaataaactctggatcaaatggaaacattttaaatgctgacatcactatg
aaggaggctgtgcagtttcttaccagcgatgatgaaaattatcaaaactgtggcgcttcc
tatattcagcacaatactttcattagcgacaaagcaaaagaagaggtcttaaagcttaag
gggatccaccctcttgtcggcttgctgcacagccacaactcacaggtcaaacacacggcc
tctgccgctctgcgaaatctgtcctttaaaagcgacaaaaacaaagaggagatccatcgc
tgtgacggcatcactgaggttgccaatcagctcagagattcagagtctgtagatctggat
aagcagctcacaggtctgttgtggaatttgtcttctgccgacaacctgaagcctgatctg
ctgaagcacgctctgcctgtcttaatggagcatgtgatcttgccttacacgacaaggtcc
ggagatacaatcagggatccagatgtcttcttacacaccacgggatgtcttcgaaacctc
agcagtgccaaggagagcagcaggcagacgatgaggaaatgtcgaggtttgattgactct
ttaaccgcttacatcaaagactgtctagagaaggaaaaaaccaatgatgagtgtttggaa
aactgtgtgggcatcctgcacaatctgaccttccgactggaggacgaggctccgatgctg
ttcaccaatataaataccttggctaggagtcagctcaggagcaccagtccaaataacagc
aaccctgttggctgcttcagttcacaaaccaaacttccacaggtggagcgtccctttgac
tttgcagtcattgaggatccgcagcctaaaggaccatcccttttgatccactctaaaacg
ctgcaggattacctttcactgcttagcttgagcacgggagaagagcttcaggaagcctgt
tgcgggacactgcacaatctcactgcacgtgaaggcattgtctccagtgtaataagccag
atcattgtgcagaaactgaatggcatgcaggttattgcgcccctcataaactcaaagaaa
gtcaacctgcagaagaccacactggctttggttggaaatttgatcaagaacccaaacctg
catcaagcagttggccgtaaagctctcccagagttgctgagtctcctcgcagaaggcacg
tctggagcaaacgagtctgatgacaaccttgctatggcttgcaatgccaccagttgcctg
gttctgaaagaccctgacatgaccaagagatatttaggcaccgacttcataaaatccctc
agcagcatcagccaaaacatgtattttcccaaatcaagcaaggctgctgcagttcttctc
gtcaaaatctggtcagataaagagcttcaaagctttttcaaaaagcaagggttgaccaag
tctttatttgtgaatgacaccaccatggcagcacacaggtctctccatattgtggattag
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