Cyprinodon variegatus (sheepshead minnow): 107104024
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Entry
107104024 CDS
T06110
Name
(RefSeq) plakophilin-1-like
KO
K10387
plakophilin 1
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cvg04812
]
107104024
Cytoskeleton proteins [BR:
cvg04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
107104024
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
Atx10homo_assoc
Symplekin_C
Motif
Other DBs
NCBI-GeneID:
107104024
NCBI-ProteinID:
XP_015259396
Ensembl:
ENSCVAG00000020834
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
MSKMSKADPLKSAISIENVDDTSLALPSGNQYRSGEQRVKAQVQTVRRIKSRHSSNSSRS
GSTSMSPTSPVYDSVFTDGVKTPSHTSNGSAFYSNGFSKSFTIDKNISNHQSITNLGSTV
RKKSVTSGYRFERTQPTAGSTVALGHANTSRSEPGVAWGRYGTQLSVPHTRNPTTEQQAS
RNNYRNQRSTSNHFVQRTISQSQPLYPANGFGLTHKQSQYKGSQPNMSKTPTQQTTTDSS
SKTKINSGSNGNILNADITMKEAVQFLTSDDENYQNCGASYIQHNTFISDKAKEEVLKLK
GIHPLVGLLHSHNSQVKHTASAALRNLSFKSDKNKEEIHRCDGITEVANQLRDSESVDLD
KQLTGLLWNLSSADNLKPDLLKHALPVLMEHVILPYTTRSGDTIRDPDVFLHTTGCLRNL
SSAKESSRQTMRKCRGLIDSLTAYIKDCLEKEKTNDECLENCVGILHNLTFRLEDEAPML
FTNINTLARSQLRSTSPNNSNPVGCFSSQTKLPQVERPFDFAVIEDPQPKGPSLLIHSKT
LQDYLSLLSLSTGEELQEACCGTLHNLTAREGIVSSVISQIIVQKLNGMQVIAPLINSKK
VNLQKTTLALVGNLIKNPNLHQAVGRKALPELLSLLAEGTSGANESDDNLAMACNATSCL
VLKDPDMTKRYLGTDFIKSLSSISQNMYFPKSSKAAAVLLVKIWSDKELQSFFKKQGLTK
SLFVNDTTMAAHRSLHIVD
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaatgtcgaaggccgatccgctgaaatcggcgatttccattgagaatgtggac
gacacgtcgctggctctgccgtcagggaatcagtaccgatccggagagcagcgcgtaaag
gcgcaagtgcaaactgtcaggaggataaagtcgaggcactcgagcaacagcagcaggagc
ggatctacttctatgagcccaacaagccctgtgtatgactccgtgtttacagatggggta
aagacaccgtcccacacatctaatggaagcgccttctacagcaatggtttctcaaaaagt
ttcaccatagacaaaaacataagcaatcatcaatcaatcaccaacctaggatctactgtg
aggaaaaagagtgtgacatcagggtatcgctttgagagaactcaacccactgctggcagt
actgtggctctgggtcatgctaacaccagccgcagtgaacccggtgtggcctggggcaga
tatggcacccagctgtctgtcccacacaccagaaaccccaccacagaacagcaggccagc
aggaacaactacaggaatcagcgtagcaccagcaatcactttgtgcagaggaccatctcc
cagtcccaacctctgtaccctgcaaacggctttggtctgactcacaaacaaagtcagtat
aaaggcagccagcctaacatgagcaagactcccacacagcaaaccactactgactcttca
tccaagactaaaataaactctggatcaaatggaaacattttaaatgctgacatcactatg
aaggaggctgtgcagtttcttaccagcgatgatgaaaattatcaaaactgtggcgcttcc
tatattcagcacaatactttcattagcgacaaagcaaaagaagaggtcttaaagcttaag
gggatccaccctcttgtcggcttgctgcacagccacaactcacaggtcaaacacacggcc
tctgccgctctgcgaaatctgtcctttaaaagcgacaaaaacaaagaggagatccatcgc
tgtgacggcatcactgaggttgccaatcagctcagagattcagagtctgtagatctggat
aagcagctcacaggtctgttgtggaatttgtcttctgccgacaacctgaagcctgatctg
ctgaagcacgctctgcctgtcttaatggagcatgtgatcttgccttacacgacaaggtcc
ggagatacaatcagggatccagatgtcttcttacacaccacgggatgtcttcgaaacctc
agcagtgccaaggagagcagcaggcagacgatgaggaaatgtcgaggtttgattgactct
ttaaccgcttacatcaaagactgtctagagaaggaaaaaaccaatgatgagtgtttggaa
aactgtgtgggcatcctgcacaatctgaccttccgactggaggacgaggctccgatgctg
ttcaccaatataaataccttggctaggagtcagctcaggagcaccagtccaaataacagc
aaccctgttggctgcttcagttcacaaaccaaacttccacaggtggagcgtccctttgac
tttgcagtcattgaggatccgcagcctaaaggaccatcccttttgatccactctaaaacg
ctgcaggattacctttcactgcttagcttgagcacgggagaagagcttcaggaagcctgt
tgcgggacactgcacaatctcactgcacgtgaaggcattgtctccagtgtaataagccag
atcattgtgcagaaactgaatggcatgcaggttattgcgcccctcataaactcaaagaaa
gtcaacctgcagaagaccacactggctttggttggaaatttgatcaagaacccaaacctg
catcaagcagttggccgtaaagctctcccagagttgctgagtctcctcgcagaaggcacg
tctggagcaaacgagtctgatgacaaccttgctatggcttgcaatgccaccagttgcctg
gttctgaaagaccctgacatgaccaagagatatttaggcaccgacttcataaaatccctc
agcagcatcagccaaaacatgtattttcccaaatcaagcaaggctgctgcagttcttctc
gtcaaaatctggtcagataaagagcttcaaagctttttcaaaaagcaagggttgaccaag
tctttatttgtgaatgacaccaccatggcagcacacaggtctctccatattgtggattag
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