Cyprinodon variegatus (sheepshead minnow): 107104506
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Entry
107104506 CDS
T06110
Name
(RefSeq) HLA class II histocompatibility antigen, DP alpha 1 chain-like
KO
K06752
MHC class II antigen
Organism
cvg
Cyprinodon variegatus (sheepshead minnow)
Pathway
cvg04145
Phagosome
cvg04514
Cell adhesion molecules
cvg04672
Intestinal immune network for IgA production
cvg05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cvg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
107104506
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
107104506
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
107104506
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
107104506
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cvg04147
]
107104506
Exosome [BR:
cvg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107104506
Exosomal proteins of epithelial cells
107104506
Exosomal proteins of breast milk
107104506
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
MHC_II_alpha
C1-set
Motif
Other DBs
NCBI-GeneID:
107104506
NCBI-ProteinID:
XP_015259998
LinkDB
All DBs
Position
Unknown
AA seq
175 aa
AA seq
DB search
MMMMKLLLFLCSVLWVSADVLHEELYILGCSDSDGEFMLSLDGEEKWFADFKKEKGEEPQ
PPFIDHISYPEGFYEQAVNDQQVCRFNMNLGRKALKGIPLEKDSALSFSPQLGDVYSCSV
EHPALQEPVTKMFDVDVHGPQPSVGPAVFCGVGLTIGLIGVAVGTFFLVKGNECS
NT seq
528 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatgaagctgctcctcttcctctgctccgtcctctgggtctctgctgatgtt
ctccatgaggagctctatatccttggctgttcagactctgatggagagttcatgctctct
ctggatggagaagagaagtggttcgctgactttaagaaggagaaaggagaagaacctcag
cctcctttcattgatcatatcagctacccggaaggattttatgaacaagctgtgaatgat
caacaggtctgcagattcaacatgaacctcggtcgtaaagctctgaagggcatccctctg
gagaaagattcagctttaagctttagccctcagctgggagacgtctacagctgctcagtg
gagcatcctgctctacaggaaccagtgactaagatgtttgatgtggacgtccatggtcct
cagcccagtgtgggacctgctgtgttctgtggagtcggtctgaccatcggactcattggc
gtcgccgtgggaaccttcttcctggtcaaagggaacgagtgcagctga
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