Chromobacterium violaceum: CV_3903
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Entry
CV_3903 CDS
T00147
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cvi
Chromobacterium violaceum
Pathway
cvi03030
DNA replication
cvi03410
Base excision repair
cvi03420
Nucleotide excision repair
cvi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cvi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CV_3903 (lig)
03410 Base excision repair
CV_3903 (lig)
03420 Nucleotide excision repair
CV_3903 (lig)
03430 Mismatch repair
CV_3903 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cvi03032
]
CV_3903 (lig)
03400 DNA repair and recombination proteins [BR:
cvi03400
]
CV_3903 (lig)
Enzymes [BR:
cvi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CV_3903 (lig)
DNA replication proteins [BR:
cvi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CV_3903 (lig)
DNA repair and recombination proteins [BR:
cvi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CV_3903 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CV_3903 (lig)
MMR (mismatch excision repair)
DNA ligase
CV_3903 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CV_3903 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
DUF7340
Motif
Other DBs
NCBI-ProteinID:
AAQ61564
LNCC_Brazil:
CV3903
UniProt:
Q7NR81
LinkDB
All DBs
Position
complement(4213148..4215613)
Genome browser
AA seq
821 aa
AA seq
DB search
MTIPGAGFAGPFAVREFPMTANELRAAELRELLNRYGHEYYVLDAPTVPDAEYDRLFREL
QALEEAHPELAVSDSPTRRVGGAPLDEFVSVVHAVPMLSLSNAFSDMQLTDPAERHSELI
QFDERVRKGLDAAEVEYATEPKFDGLAISLLYENGVLTRAATRGDGVAGEQVTENVRTIR
AIPLKLDGANPPALLEVRGEVLMLKRDFERLNADQIARGDKTFANPRNAAAGSLRQLDSR
ITAQRRLSFFAYSIAQVGGADWPATHAGEMAWLKTLGFPVVMDSLRPVVSGAAGLAGYYE
AVLTARAGLPFEIDGVVYKVNRRDQQEALGFVSRAPRWAIAHKFPAEEALTCVEAIEEQV
GRTGAITPVARLKPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVVVRRAGDVIPEVVSVV
LAQRPMQPAEGGDLFSAGEEPRYPAYRLPTACPVCGSHVVREEGEAIARCSGGLSCRAQR
SQAIQHFAGRRMMDIDGLGERYIDKLVEYGYVQGVADLYRLKLEDLLEMKRRADEDEGVT
PETVKAGKVASKWAENLIEAIDASRAPPLARLLFALGIRHVGESTAKTLADWLGTMALIR
RCPAALFAALPDIGGVVADSLADFFAEDNNEKALDALLAEVKPADEHAPSPKLRERLDDA
SLLARLAIPRLTEVRSQQLAAQRSLAWLGQSERRALLALELPAEVVNALADWLDEPGRRA
ALASLAGLRDEILASLPAAAEAAALPLEGKTLVLTGTLPTLSRDQAKALIEAAGGKVSGS
VSKKTHYVVAGEEAGGKLAKAQELGVAILDEAGLQALLAGN
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
ttgacgatacccggggccggctttgccggcccttttgccgttcgagagtttccgatgacc
gcaaatgaattgcgcgcagccgagctgcgcgagctgctgaaccgctacggccatgaatat
tatgtgctggacgcgccgacggtgcccgacgccgaatacgaccgcctgttccgcgagctg
caggcgctggaagaggcgcatccggaactggcggtctccgattcgccgacccgccgcgtc
ggcggcgcgccgctggacgagttcgtcagcgtcgtgcacgcggtgcctatgctgtccctg
tccaacgctttctccgacatgcagctgaccgacccggccgagcgccactccgagctgatc
cagttcgacgagcgggtgcgcaagggactggacgcggccgaggtggagtacgcgaccgaa
cccaagttcgacggcctggctatctccctgctgtacgagaacggcgtgctgacccgcgcc
gccacccgcggcgacggcgtggccggcgagcaggtgaccgagaacgtgcgcaccatacgc
gcgattccgctgaagctggatggcgcgaatccgccggcgctgctggaggtgcgcggcgag
gtgctgatgctgaagcgcgacttcgagcggctgaacgccgatcagatcgcccgcggcgac
aagaccttcgccaatccgcgcaacgccgccgccggtagtctgcgccagctggattcgcgc
atcaccgcgcagcgccggctgtcgttcttcgcttattccatcgcccaggtcggcggggct
gactggccggcgacgcacgccggcgagatggcctggctgaaaacgctgggttttccggtg
gtcatggacagcctgcggccggtggtcagcggcgcagccggcctggccggctattacgag
gcggtgctgacggcccgcgccggcctgcccttcgagatagacggcgtggtgtacaaggtg
aaccggcgcgaccagcaggaggcgctgggtttcgtgtcgcgcgcgccgcgctgggccatc
gcccacaaattcccggcggaggaagcgctgacctgcgtcgaggcgatcgaggagcaggtg
ggccgcaccggcgccatcacgccggtggcgcggctgaagccggtcttcgtcggcggcgtc
accgtcaccaacgccacgctgcacaatgaggacgaggtgcggcgcaaggacgtgcgcgtc
ggcgacaccgtggtggtgcgccgcgccggcgacgtgattcccgaggtggtgtcggtggtg
ctggcgcagcggccgatgcagccggccgaaggcggcgacctgttcagtgccggcgaggag
ccgcgatacccggcctaccgcttgccgaccgcctgcccggtgtgcggcagccacgtggtg
cgcgaggagggcgaggccatcgcccgctgctcgggcgggctgtcctgccgtgcccagcgc
agccaggcgatccagcacttcgccggccgccgcatgatggacattgacggcctgggcgag
cgctatatcgacaagctggtcgagtacggttatgtccagggcgtggccgacctgtaccgg
ctgaagctggaagacctgctggagatgaagcgccgcgccgacgaggacgagggcgtgacg
ccggagacggtgaaggccggcaaggtggccagcaagtgggcggaaaacctgatcgaggcg
atagacgccagccgcgcgccgccgctggcccgactcctgttcgcgctgggcatccgccat
gtcggcgaatccaccgccaagacgctggccgactggctgggcaccatggcgctgatccgc
cgctgtccggcggcgttgttcgccgcgctgccggacatcggcggcgtggtggccgattcg
ctggccgattttttcgccgaggacaacaatgaaaaggcgctggacgccttgctggccgaa
gtgaagccggccgacgagcatgcgccgtcgcccaagctgcgcgagcggctggacgacgcg
tcgctgctggcgcggctggccattccgcggctgaccgaggtgcgcagccagcaactggcc
gcgcagcgcagcctggcctggctggggcagagcgagcgccgcgcgttgctggcgctggaa
ctgccggccgaggtggtcaacgccctggccgactggctggacgaaccgggccgccgcgcg
gcgctggccagcctggccggcctgcgggacgagatccttgccagcctgccggccgcggcc
gaggcggcggcgctgccgctggaaggcaagacgctggtgctgaccggcacgctgcccacg
ctgagccgcgatcaggccaaggcgctgatcgaggccgccggcggcaaggtgtccggcagc
gtgtccaagaaaacccactacgtggtggccggcgaggaggcgggcggcaagctcgccaag
gcgcaggaactgggcgtggcgatactggacgaggcaggcctgcaagccttgctggcgggt
aactga
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